BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_F04 (736 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 154 1e-38 SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 56 5e-09 SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 55 9e-09 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 53 5e-08 SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 48 1e-06 SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 4e-06 SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 6e-06 SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 46 7e-06 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 1e-05 SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 45 1e-05 SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 44 2e-05 SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 4e-05 SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 42 7e-05 SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 9e-05 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 1e-04 SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04 SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001 SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 38 0.002 SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005 SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 36 0.008 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.008 SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.008 SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 36 0.008 SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 35 0.014 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.018 SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 34 0.018 SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 34 0.024 SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 33 0.032 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.032 SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.39 SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.39 SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.39 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.69 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 28 1.2 SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 1.6 SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.1 SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 2.8 SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 4.8 SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.8 SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 26 6.4 >SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 182 Score = 154 bits (373), Expect = 1e-38 Identities = 68/118 (57%), Positives = 91/118 (77%) Frame = +1 Query: 187 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 366 +S Y + FK + + K S+ +Y+GNLSFYTTEEQIY L+S+CG+IRR+IMG+D++ Sbjct: 10 VSPYLIRRFKNDLRALDAV-KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF 68 Query: 367 KKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 540 KTPCGFCFVEY+ +DA + ++YI+ T LD+RIIR D D G+ EGRQYGRG +GGQV Sbjct: 69 TKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQV 126 >SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 56.0 bits (129), Expect = 5e-09 Identities = 28/112 (25%), Positives = 58/112 (51%) Frame = +1 Query: 202 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 381 D + R+++E + + ++Y+GN+ + T E++ ++ CG + RV + DK+ P Sbjct: 39 DNETEALRNDKESI--DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPK 96 Query: 382 GFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 GF ++E+ N + +NG+ L +R ++ + G GRG+ G+ Sbjct: 97 GFAYIEFSEPSLVPNAL-LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGR 147 >SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizosaccharomyces pombe|chr 2|||Manual Length = 282 Score = 55.2 bits (127), Expect = 9e-09 Identities = 29/77 (37%), Positives = 45/77 (58%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S+TL + NLS T EE++ +L+ R G I+RV + DK GF FV YY R+ A Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260 Query: 433 RYINGTRLDDRIIRCDW 483 ++G ++ I+RC++ Sbjct: 261 DRLDGYGWNNLILRCEF 277 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 52.8 bits (121), Expect = 5e-08 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Frame = +1 Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 414 ++L + S T+++GNLSF TE+ + + CGDI+ + + D GF +V + + Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418 Query: 415 DAENCMRYINGTRLDDRIIRCDWDAGFI-EGRQYGRGKTGGQ 537 A+ C+ +NG + R R D+ G + GRG GG+ Sbjct: 419 SAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFGGR 459 >SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 653 Score = 48.0 bits (109), Expect = 1e-06 Identities = 24/90 (26%), Positives = 43/90 (47%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S++LY+G L TE ++EL++ G + + + D + G+ +V ++ ED E + Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 433 RYINGTRLDDRIIRCDWDAGFIEGRQYGRG 522 +N T + R R W R+ G G Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTG 168 Score = 40.7 bits (91), Expect = 2e-04 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = +1 Query: 208 HFKGSRSEQEKL--LKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 378 H R Q K+ LKA+ T +YI NL TE++ +L+ + G+I + + D+ K P Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-P 300 Query: 379 CGFCFVEYYAREDAENCMRYIN 444 GF FV Y E A+ + +N Sbjct: 301 RGFGFVNYANHECAQKAVDELN 322 >SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 46.4 bits (105), Expect = 4e-06 Identities = 20/80 (25%), Positives = 41/80 (51%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 + S +Y+GN+ + EEQ+ +++ + G ++ + +D P G+ F EY+ A Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60 Query: 424 NCMRYINGTRLDDRIIRCDW 483 + +R +N R +R D+ Sbjct: 61 SAVRNLNNYDAGTRRLRVDF 80 >SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 46.0 bits (104), Expect = 6e-06 Identities = 29/96 (30%), Positives = 46/96 (47%) Frame = +1 Query: 172 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 351 +S SS R SRS +E L T+ + NL+ T+E I E++ G I + M Sbjct: 75 SSRDSFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFM 130 Query: 352 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 459 + K + G+C++EY + A N + +N LD Sbjct: 131 PIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELD 166 >SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 45.6 bits (103), Expect = 7e-06 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Frame = +1 Query: 163 DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRR 342 +++ +E S H +S +++G LS T + +I L+ G +R+ Sbjct: 13 NTVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRK 72 Query: 343 VIMGLDKYKK----TPCGFCFVEYYAREDAENCMRYINGTRLDDRII 471 V + + ++ P G FV + +ED + + +NG LDDR I Sbjct: 73 VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 45.2 bits (102), Expect = 1e-05 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Frame = +1 Query: 205 QHFKGSRSEQEK---LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT 375 Q + + SEQE+ L+ + L++ NL++ E+ + L+ G + +V M +DK Sbjct: 303 QKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN 362 Query: 376 PCGFCFVEYYAREDAENCMRYINGTRLDDRII 471 P GF +++++ +DA ++ R++ Sbjct: 363 PKGFAYIDFHDADDAVRAYLELDAKPFQGRLL 394 Score = 32.3 bits (70), Expect = 0.074 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP-----CGFCFVEYYARED 417 ++T+Y+ NL+F T +E+ +++ ++ K P GF FVE+ + Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 418 AENCMRYINGTRLD 459 A M +NG LD Sbjct: 678 AVAAMHAMNGFVLD 691 >SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity factor complex subunit Ctf1|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 44.8 bits (101), Expect = 1e-05 Identities = 19/80 (23%), Positives = 45/80 (56%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 + A + +++GN+ + +E+Q+ E++++ G ++ + LD + G+ F E++ E Sbjct: 3 MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTA 62 Query: 424 NCMRYINGTRLDDRIIRCDW 483 +R +N + L R IR ++ Sbjct: 63 MAVRKLNNSELGPRKIRVEF 82 >SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 137 Score = 44.4 bits (100), Expect = 2e-05 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 + +S L+I NLSF T E++Y+L+ R G +R++ +G + G FV Y +DA Sbjct: 9 EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARR 65 Query: 427 CMRYINGTRLDDRII 471 ++G DR + Sbjct: 66 ACEKLSGYNFMDRYL 80 >SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces pombe|chr 2|||Manual Length = 217 Score = 43.2 bits (97), Expect = 4e-05 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Frame = +1 Query: 169 MNSSIEISSYRDQHF-KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 345 MNS +I +Q K S + S+ +YIGNL F E+ I ++S G+ + Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60 Query: 346 IMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGF 495 + DK GF F++Y + + + +L DR++R D A + Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110 >SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizosaccharomyces pombe|chr 1|||Manual Length = 335 Score = 42.3 bits (95), Expect = 7e-05 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +T+Y+GNL T+ ++EL + G + + + D+ + + GF F E+ +D E + Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70 Query: 436 YINGTRLDDRIIR 474 +N +L + IR Sbjct: 71 ILNQVKLFGKPIR 83 >SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 116 Score = 41.9 bits (94), Expect = 9e-05 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 + +T+++GNL+ TE +Y + G+I V + K K + FVE+ EDA+ Sbjct: 3 RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKE 61 Query: 427 CMRYINGTRLDDRIIR 474 M +N + L DR IR Sbjct: 62 AMENMNYSILCDRCIR 77 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 41.5 bits (93), Expect = 1e-04 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 226 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYKKTPCGFCFVEY 402 S Q + SS L++GNL F TT+ + E + + G IRRV +M + K GF FV++ Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK-GFGFVDF 276 Query: 403 YAREDAENCMR 435 D + CM+ Sbjct: 277 ---PDIDTCMK 284 Score = 28.7 bits (61), Expect = 0.91 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 324 K QE+ ++ +++GNLSF+TT+E + + + R Sbjct: 91 KEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVR 127 >SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 40.7 bits (91), Expect = 2e-04 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYEL-YSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 L I NL + + Q E +S+ G +R + + K CGF FV R+ AE M Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNS 167 Query: 439 INGTRLDDRIIRCDW 483 +NGT +D R I DW Sbjct: 168 LNGTEIDGRPIAVDW 182 >SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 2|||Manual Length = 473 Score = 40.3 bits (90), Expect = 3e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A+ST+++G LS + +EE++ L+ G+I V + K CG FV++ R+ AE Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK----GCG--FVQFVNRQSAEIA 354 Query: 430 MRYINGTRLDDRIIRCDW 483 + + G L + IR W Sbjct: 355 INQLQGYPLGNSRIRLSW 372 Score = 39.1 bits (87), Expect = 6e-04 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = +1 Query: 226 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 405 S +++ + +TL++G L + TE I ++++ G +V + ++Y G+CFVE+ Sbjct: 83 SSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFA 142 Query: 406 AREDAENCMRYIN 444 + +A + M N Sbjct: 143 SPHEASSAMSMNN 155 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 37.9 bits (84), Expect = 0.001 Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Frame = +1 Query: 139 AYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKA--SSTLYIGNLSFYTTEEQIYE 312 A +M + D M ++E+ R H K S +Y+GNL + T++ + + Sbjct: 239 AIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLD 298 Query: 313 LYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 L++ G + R + + ++ GF V++ DA + + +NG R R ++ + Sbjct: 299 LFTDIGSVIRARIAYEPTGRSK-GFGVVQFENENDAASSIEKLNGYRYGGRPLQLSY 354 Score = 31.1 bits (67), Expect = 0.17 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 8/99 (8%) Frame = +1 Query: 199 RDQHFKGSRSEQE-------KLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMG 354 R HF G +E++ K + +Y+GNLS+ ++ E + G++ I+ Sbjct: 40 RGLHFDGEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN 99 Query: 355 LDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 471 L C +EY E+A ++ ++ + R++ Sbjct: 100 LPNGLSKGC--AIIEYSTAEEARTAIKTLSNQKFMGRLV 136 >SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 37.5 bits (83), Expect = 0.002 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Frame = +1 Query: 139 AYKMKRSYDSMNSSIEISS--YRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYE 312 AY + R S S++ ++ + D+H + +++GNL+F EE ++ Sbjct: 229 AYIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWR 288 Query: 313 LYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 + CG I V + D GF ++++ Sbjct: 289 YFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318 >SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 36.3 bits (80), Expect = 0.005 Identities = 19/70 (27%), Positives = 38/70 (54%) Frame = +1 Query: 292 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 471 TEEQ+ +L++ G ++ + + LD+ G+ +EY E A+ + N + LD+++ Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL- 80 Query: 472 RCDWDAGFIE 501 + D F+E Sbjct: 81 --EVDFAFLE 88 >SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 35.5 bits (78), Expect = 0.008 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +1 Query: 241 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 420 +L + +YI NL E+Q+ EL GD+ + + + GFCF E+ DA Sbjct: 305 VLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364 Query: 421 ENCMRYING 447 E + ++G Sbjct: 365 EVAISGLDG 373 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 35.5 bits (78), Expect = 0.008 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L + N+ F T+E + ++ GDI V + D ++ GF +++Y A N + + Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK-GFGYIQYRNPISARNALEKM 400 Query: 442 NGTRLDDRIIR 474 NG L R +R Sbjct: 401 NGFDLAGRNMR 411 >SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccharomyces pombe|chr 3|||Manual Length = 276 Score = 35.5 bits (78), Expect = 0.008 Identities = 20/99 (20%), Positives = 47/99 (47%) Frame = +1 Query: 181 IEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLD 360 +++ ++ K SE + L K LY+G L E+Q+ +S+ G + R+ M + Sbjct: 80 MDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139 Query: 361 KYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 477 + + + F+E+ + + A ++ L ++++C Sbjct: 140 RKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQC 178 >SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 35.5 bits (78), Expect = 0.008 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Frame = +1 Query: 118 IIEK*EQAYKMKRSYDSMNSSIE-------ISSYRDQHFKGSRSEQEKLLKASSTLYIGN 276 I +K YK KR+ NSS + + +D H + + ++ + + + + N Sbjct: 32 ISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSENRFGVRVEN 91 Query: 277 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 456 L + E+ + L+ IR VIM D+ ++ G C V + +DAE+ + + T L Sbjct: 92 LHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSE-GSCDVYFETSQDAEDAQKTLQSTNL 149 >SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating transcription Rct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 34.7 bits (76), Expect = 0.014 Identities = 21/86 (24%), Positives = 37/86 (43%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + L++ L+ T +E + ++SR G I + DK + F+E+ +E E Sbjct: 244 NVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYF 303 Query: 436 YINGTRLDDRIIRCDWDAGFIEGRQY 513 + +DD I D+ RQY Sbjct: 304 KMQNVLIDDSRIHVDFSQSVARYRQY 329 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 34.3 bits (75), Expect = 0.018 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYK----KTP 378 K S + K ++Y+GNL ++EL+ G+ + ++ K K K+P Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65 Query: 379 CGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F F+ + + A+N + +NG+ ++ ++ Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100 >SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces pombe|chr 3|||Manual Length = 761 Score = 34.3 bits (75), Expect = 0.018 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +T+Y+GNLS E+++ +S+ RR+ + K CFVE+ A M Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKI----KGNSPMCFVEFEEVCHAAKAME 657 Query: 436 YINGTRLDDRI 468 + G LDD+I Sbjct: 658 KMQGAALDDKI 668 >SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 33.9 bits (74), Expect = 0.024 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%) Frame = +1 Query: 151 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCG 330 KR Y+S ++ S R++ K SE + +YI L T ++I E++ +CG Sbjct: 75 KRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCG 134 Query: 331 DI-RRVIMGLDKYK------KTPCGFCFVEYYAREDAE 423 I + + G + K TP G + ++ E E Sbjct: 135 VIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVE 172 >SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 33.5 bits (73), Expect = 0.032 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Frame = +1 Query: 187 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 366 ++ +R + + + AS L++ NL + EL+S+ GD++ G+D Sbjct: 172 VTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVK----GIDTS 227 Query: 367 KKTPCGFCFVEYYAREDAENCMRYINGTR-LDDRII 471 + G C V ++ A + + R +DR++ Sbjct: 228 SLSTDGICIVAFFDIRQAIQAAKSLRSQRFFNDRLL 263 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 33.5 bits (73), Expect = 0.032 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = +1 Query: 223 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 R EQEK K +++G + TEE+ +++ G + + +DK P GF FV Y Sbjct: 240 REEQEKTAK----MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295 Query: 403 YAREDAENCM 432 E M Sbjct: 296 ENESAVEATM 305 Score = 25.4 bits (53), Expect = 8.5 Identities = 14/82 (17%), Positives = 38/82 (46%) Frame = +1 Query: 157 SYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI 336 +Y+ S++ S + + + + E + ++IG L++ TT++ + + + + G++ Sbjct: 131 NYNENQSALTGSGAMESN-EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189 Query: 337 RRVIMGLDKYKKTPCGFCFVEY 402 + D GF F+ + Sbjct: 190 LDCTVMRDSTTGRSRGFGFLTF 211 >SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 29.9 bits (64), Expect = 0.39 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL 357 SST+Y+GN+ ++E+I + +S+ G + + L Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRL 50 >SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces pombe|chr 2|||Manual Length = 490 Score = 29.9 bits (64), Expect = 0.39 Identities = 14/76 (18%), Positives = 34/76 (44%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + + + N+ F ++ + + + + G R G F +Y E+A+ ++ Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261 Query: 436 YINGTRLDDRIIRCDW 483 +NG ++ R +R +W Sbjct: 262 TLNGYEINGRRLRVEW 277 >SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 29.9 bits (64), Expect = 0.39 Identities = 14/76 (18%), Positives = 35/76 (46%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + + I N+ F +E ++++++ R G F +++ E+A+ ++ Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291 Query: 436 YINGTRLDDRIIRCDW 483 +NG + R +R +W Sbjct: 292 VLNGYEITGRRLRVEW 307 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 29.1 bits (62), Expect = 0.69 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = +1 Query: 259 TLYI-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 TLY+ G E YE + G + R + + + +T F FVEY DAE+ Sbjct: 8 TLYVTGFRDGMRARELAYE-FEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYY 65 Query: 436 YINGTRLD--DRIIRCDW 483 ++G RL+ ++R +W Sbjct: 66 EVHGRRLERGGGVLRVEW 83 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 28.3 bits (60), Expect = 1.2 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +T+Y+GNL T+EE++ L+S +R+ K CFVE+ A ++ Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF----RTKGNGPMCFVEFENIPYAMEALK 481 Query: 436 YINGTRLDDRI 468 + G L I Sbjct: 482 NLQGVCLSSSI 492 >SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizosaccharomyces pombe|chr 3|||Manual Length = 920 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/50 (24%), Positives = 25/50 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411 +++ N+S T EQ+ + G++ + + L+ Y T G C + + R Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKR 145 >SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces pombe|chr 1|||Manual Length = 632 Score = 27.5 bits (58), Expect = 2.1 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK--KTPCGFCFVEYYAREDA 420 K S TL++G+L + I +L++ + V + K +T +CFV++ + A Sbjct: 82 KMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAA 141 Query: 421 ENCMRYINGTRL 456 E + N T + Sbjct: 142 ERALMKYNNTMI 153 >SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Schizosaccharomyces pombe|chr 2|||Manual Length = 388 Score = 27.1 bits (57), Expect = 2.8 Identities = 18/72 (25%), Positives = 34/72 (47%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 T ++GNLSF TE + + + + + + +D + GF +VE + D + Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVE-FETADTLSAALA 151 Query: 439 INGTRLDDRIIR 474 ++G L R +R Sbjct: 152 LSGEDLMGRPVR 163 >SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 463 Score = 26.2 bits (55), Expect = 4.8 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -2 Query: 594 YFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSV 460 Y + T+TP ++S S + S ATTV +T ++ T Y+V Sbjct: 183 YHNSTSTPPPTITSTKASTVTSTEATTVTTT-TAVTVTATETYTV 226 >SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces pombe|chr 2|||Manual Length = 897 Score = 26.2 bits (55), Expect = 4.8 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +1 Query: 235 EKLLKASSTLY-IGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411 EK LK S + +G+ FY T + ++R +RR + K C FC +AR Sbjct: 9 EKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFC-NRAFAR 67 Query: 412 EDAEN 426 D N Sbjct: 68 SDVLN 72 >SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 257 Score = 25.8 bits (54), Expect = 6.4 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 345 S+ + + N+S TE+QI + +S CG + + Sbjct: 2 SNQVIVTNISPEVTEKQISDFFSFCGKVSNI 32 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,881,837 Number of Sequences: 5004 Number of extensions: 58691 Number of successful extensions: 204 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 199 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 347244562 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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