Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F04
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 54 1e-07
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 53 2e-07
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 47 1e-05
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 47 2e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 45 7e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 42 4e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.003
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.005
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.005
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 38 0.008
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.034
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 35 0.060
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.060
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.079
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.10
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.14
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.24
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 33 0.24
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 32 0.42
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.42
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.42
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.97
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 30 1.7
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 2.2
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 3.9
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 3.9
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 9.0
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 28 9.0
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +1
Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432
++T+ + NLS T E + EL+ G I R+ + DK+ GF F+ + REDA +
Sbjct: 180 TATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAI 239
Query: 433 RYINGTRLDDRIIRCDW 483
++G D I+ +W
Sbjct: 240 EVLSGFGYDHLILNVEW 256
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = +1
Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438
++++GN+ + +EEQ+ E++S G + + D+ P G+ F EY +E A + MR
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 439 INGTRLDDRIIRCD 480
+NG L+ R +R D
Sbjct: 86 LNGYELNGRALRVD 99
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/79 (27%), Positives = 44/79 (55%)
Frame = +1
Query: 241 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 420
L + ST+Y+GNL + T +++++ R G + +V + DK + G F+ + R+ A
Sbjct: 5 LAPSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSA 64
Query: 421 ENCMRYINGTRLDDRIIRC 477
+N + +N ++ R I+C
Sbjct: 65 QNAVAAVNKKQMFGRTIKC 83
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +1
Query: 208 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 387
H G++S+ TLY+ N+ + +E I L+ +CG + +V + D ++ GF
Sbjct: 263 HMNGNKSQAPP----GCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGF 318
Query: 388 CFVEYYAREDAENCMRYING 447
CFV +E+A+N ++ +NG
Sbjct: 319 CFVTMATQEEAQNAIQTLNG 338
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/82 (18%), Positives = 38/82 (46%)
Frame = +1
Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408
E ++ ++ +TL + + T++ ++ + + K GF FV+Y
Sbjct: 38 EPQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNT 97
Query: 409 REDAENCMRYINGTRLDDRIIR 474
EDA+ + +NG + +++++
Sbjct: 98 TEDAQKAIDKLNGFTIGNKVLK 119
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +1
Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432
++ LY+GNL ++ + + G + +V + + P GF FVEY DAE +
Sbjct: 3 TTKLYVGNLGRNADSSELERAFEKFGRLSKVWVA-----RNPPGFAFVEYEDYRDAEEAV 57
Query: 433 RYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537
R ++G + DR IR ++ + GR G G+ G+
Sbjct: 58 RELDGANVCDRTIRVEF-SNNRGGRDRGGGRPRGR 91
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441
L++ N+ E+ I+EL+S G+I+ + + LD+ G+ VEY ++A++ + +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 442 NGTRLDDRIIRCDWDAGFIEG 504
NG + + I DW FI G
Sbjct: 355 NGAEMLGQNISVDW--AFIRG 373
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/111 (23%), Positives = 52/111 (46%)
Frame = +1
Query: 142 YKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYS 321
Y M++S + + + + + + +++++ L +Y+G+++F EE I +
Sbjct: 64 YAMEQSVQQVLAKQQALQAQQMNALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFH 123
Query: 322 RCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 474
G I ++ + D GF FVEY E A+ + +NG L R I+
Sbjct: 124 PFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIK 174
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435
++L + NL++ TT E + +++ + GD+ + + D+ GF FV +Y + DAE+ M
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
Query: 436 YINGTRL 456
++ T L
Sbjct: 76 CMDATCL 82
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +1
Query: 220 SRSEQEKLLKASST-----LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 384
SRS + K S T LY+ +L+ ++ + E++S G ++ V + D+ G
Sbjct: 1140 SRSRSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRG 1199
Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRII 471
F +VEY E+ E +++++G ++D + I
Sbjct: 1200 FAYVEYVDPEECEKALKHMDGGQIDGQEI 1228
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/73 (30%), Positives = 41/73 (56%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435
+T+Y+G L +E I+EL+ + G + V M D+ + G+ FVE+ EDA+ ++
Sbjct: 13 ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIK 72
Query: 436 YINGTRLDDRIIR 474
+N ++ + IR
Sbjct: 73 VMNMIKVYGKPIR 85
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/86 (31%), Positives = 46/86 (53%)
Frame = +1
Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444
YIGNL F E + + +SR D+ V + D+ + P GF FV + ++++ E+ + ++
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 445 GTRLDDRIIRCDWDAGFIEGRQYGRG 522
G D R ++ + A E R GRG
Sbjct: 292 GQEFDGRSMKVN-QARSREQRGGGRG 316
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRR---VIMGLDKYKKTPCGFCFVEYYAREDAENCM 432
L+IGNL +E I ++ + G+I + G + P G+CFVE+ +EDA +
Sbjct: 389 LWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
Query: 433 RYINGTRLDDRIIRCDW 483
R +N + R + DW
Sbjct: 449 RGLNKKIVLSRALVVDW 465
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423
L++G LS+ TT+E + E +S+ G++ V + +D P GF FV++ + +A+
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/94 (27%), Positives = 46/94 (48%)
Frame = +1
Query: 151 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCG 330
K ++ S + +S D H + S+ +K T++I NLSF +T++ I L+ + G
Sbjct: 384 KDDNNNEKSDEDDASEDDNHSQRSKPSD---VKEGLTVFIRNLSFDSTQKNITNLFKQFG 440
Query: 331 DIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432
DI + +D + G FV+Y + E C+
Sbjct: 441 DIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCL 474
Score = 35.5 bits (78), Expect = 0.045
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY--KKTPCGFCFVEYYAREDAENC 429
S L I NL+F TE + E +S G++ + K + GF FV++ DA
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKA 306
Query: 430 MRYINGTRLDDRIIRCDW 483
+ +N ++ R + DW
Sbjct: 307 LEEMNAKKILGRPVAVDW 324
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%)
Frame = +1
Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438
TL++ NL F E +I EL+S+ G +++V + ++ K P G+ +VEY A +
Sbjct: 172 TLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGK-PKGYGYVEYEQESSASTAVLT 230
Query: 439 INGTRLDDRII 471
++ T + R I
Sbjct: 231 LDKTEVKGRTI 241
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444
YIGNLS+ E+ + E + C D+ V + D+ P GF FV + ++E+ E + +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGC-DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 445 GTRLDDR 465
G D R
Sbjct: 67 GQDFDGR 73
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399
+ +E+ K + LY+G+L F TE + ++ G + V + D G+ FV+
Sbjct: 230 AEAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQ 289
Query: 400 YYAREDAENCMRYINGTRLDDRIIR 474
+ E A+ M +NG L R ++
Sbjct: 290 FREAEAAKRAMEQMNGFELAGRPLK 314
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.7 bits (86), Expect = 0.005
Identities = 27/91 (29%), Positives = 45/91 (49%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441
+Y+GNL E+ +++++ + G I V + + P F FVE+ DAE+ ++
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--FAFVEFEDPRDAEDAVKGR 320
Query: 442 NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534
+G D IR ++ G GR G G GG
Sbjct: 321 DGHEFDGYRIRVEFPRGG-SGRGGGGGGGGG 350
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441
++IG L Y E+Q+ EL S G++R + D G+ F EY + ++ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 442 NGTRLDDR 465
NG +L D+
Sbjct: 735 NGMQLGDK 742
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/89 (24%), Positives = 43/89 (48%)
Frame = +1
Query: 208 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 387
H + + +K +++IGNL F EE + EL++ CG++ V + D+ GF
Sbjct: 40 HIRVDLASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGF 99
Query: 388 CFVEYYAREDAENCMRYINGTRLDDRIIR 474
+V + +++ ++ +N R IR
Sbjct: 100 GYVLFESKDAVVFALK-MNNAEFKGRKIR 127
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408
+ K+ + T+++ NL T E + +S CGDI+ + MG D K P + ++E+
Sbjct: 63 DANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGK--PTRYAYIEFAE 120
Query: 409 REDAENCMRY 438
+ + ++Y
Sbjct: 121 TQAIVSALQY 130
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 37.5 bits (83), Expect = 0.011
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +1
Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF-CFVEYYAREDAE 423
++ +TLY+G L TE+ + + + + G++R + M + C F CF A E A
Sbjct: 301 RSITTLYVGGLEGKVTEQDLRDHFYQFGELRSISM----VPRQNCAFVCFTSRAAAEAAA 356
Query: 424 NCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534
+ R N L R ++ W G +G+Q G+ GG
Sbjct: 357 D--RSFNKLILKGRRLKIMW--GKSQGQQPAPGRQGG 389
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +1
Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438
+LY+GNL T+E I ++++ + R M K P +CFVE+ DA+
Sbjct: 370 SLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADAQEAKFR 427
Query: 439 INGTRLDDRIIRCDW 483
++ + D+ ++ +W
Sbjct: 428 MDQRTVMDKKLKVNW 442
Score = 31.9 bits (69), Expect = 0.55
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYS-RCGDI---RRVIMGLDKYKKTPCGFCFVEY 402
EKL K +S LY SF+ + +++S D+ R V + D K GF FV +
Sbjct: 504 EKLSKPTSRLYFW--SFHEWSTFLDDIFSYTVPDLFVAREVRVVKDPAKNKSKGFGFVSF 561
Query: 403 YAREDAENCMRYINGTRLDDRIIRCDWDA 489
REDA + ++ + + ++ +W A
Sbjct: 562 VRREDAAKAIAEMDSVTIGGKQVKTNWAA 590
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 35.9 bits (79), Expect = 0.034
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435
+ L++ L+ TT+E + ++SR G I + D+ + F+E+ ED E
Sbjct: 120 NVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYF 179
Query: 436 YINGTRLDDRIIRCDW 483
++ +DDR I D+
Sbjct: 180 KMDNVLIDDRRIHVDF 195
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432
L + L + TTE ++ E ++R G+I + LD + GF FV + EDA+N +
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.5 bits (78), Expect = 0.045
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435
S +YIGN+ ++ +I + G +R V + + P GF F + R DAE+ +R
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVA-----RNPPGFAFCVFEDRRDAEDAVR 56
Query: 436 YINGTRLDDRIIRCDWDAGFIEGR 507
++G + + R + G GR
Sbjct: 57 ELDGRYICGQRARVELAKGPSRGR 80
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 35.1 bits (77), Expect = 0.060
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 226 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI-RRVIMGLDKYKKTPCGFCFVEY 402
SE EKL K ++IG L++ TTEE + + +S+ G I VIM D + GF FV Y
Sbjct: 44 SESEKLRK----IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSR---GFGFVTY 96
Query: 403 YAREDAENCMRYINGTRLDDRII 471
+ + ++ + LDDR I
Sbjct: 97 ESSDSVNEVLKKKDHV-LDDREI 118
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 292 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 471
++E I +++ G++ + D+ G+ FV Y +DA +R +NG RL ++ +
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTL 98
Query: 472 R 474
+
Sbjct: 99 K 99
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 34.7 bits (76), Expect = 0.079
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 253 SSTLYIGNLSF-YTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429
S TL++ L + I EL+S+ G++ + ++ GF FV+Y E+AE
Sbjct: 204 SRTLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKG 263
Query: 430 MRYINGTRLDDRIIR 474
R NG +++ IR
Sbjct: 264 QRAHNGRQVEGSNIR 278
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY--AREDAENC 429
++LY+G+L+ TE +YE +S G + + + D + G+ +V + + A
Sbjct: 13 ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEA 72
Query: 430 MRYINGTRLDDR 465
+ ++G L+D+
Sbjct: 73 IARVDGMLLNDK 84
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444
Y+G L+ E+ ++ + GDI V + +D GF FVE+ ED + +N
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 445 GTRLDDRIIR 474
+ L R IR
Sbjct: 68 ESELFGRTIR 77
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 193 SYRDQHF----KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 351
S + HF K S E+E L + TL++ N+ Y T+ I +L+ +CG ++ V +
Sbjct: 17 SCKSNHFLYFKKHSVREEESLRPSDKTLFVINVPPYCTKLAIKKLFGKCGGVKSVYL 73
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441
+++G + E+++ ++ G I V + +D + G+ FV Y +++DA+ C++ +
Sbjct: 76 VFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTL 134
Query: 442 N 444
N
Sbjct: 135 N 135
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +1
Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423
+ AS ++IG LS TE + EL+++ G ++ V++ D+ K+ FV +++ + AE
Sbjct: 520 MAASFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQS-GFVHFWSSDVAE 578
Query: 424 NCMRYINGTRLDDRII 471
+NG + +I+
Sbjct: 579 AANVGMNGCDILGKIV 594
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/70 (20%), Positives = 34/70 (48%)
Frame = +1
Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426
K S ++IG + E+++ ++ CG I + +D GF F + +++A+N
Sbjct: 149 KVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQN 208
Query: 427 CMRYINGTRL 456
++ ++ +
Sbjct: 209 AVKKLDNKEI 218
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423
+K +Y+ NLS TEE++ E YS+ G + RV K K + FV + R+ A
Sbjct: 325 MKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRV----KKLK----DYAFVHFTERDHAL 376
Query: 424 NCMRYINGTRLD 459
+ +G +D
Sbjct: 377 KAIEETDGKEMD 388
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +1
Query: 241 LLKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARED 417
L +A T +YIG+L ++ +I + G ++ V + + P GF F + R D
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVA-----RNPPGFAFCIFDDRRD 80
Query: 418 AENCMRYINGTRLDDRIIRCDWDAGFIEGR 507
AE+ +R ++G + + +R + G GR
Sbjct: 81 AEDAVRELDGRYICGQRVRVELAKGPSRGR 110
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 163 DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRR 342
DS+ + + + ++ GS E + TL++ NLSF +TEE + + ++ G ++
Sbjct: 507 DSLEKTDKDADQSEEQNAGSDEEDTE----GVTLFVKNLSFESTEEALKQKFAAVGPVKS 562
Query: 343 VIMGLDKYKKTPCG 384
+ K K P G
Sbjct: 563 ATIAKKKDPKKPGG 576
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 217 GSRSEQEKLLKA--SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFC 390
G S ++ + K S L + +L F TT +++ E + +CG++ + + ++ K+T
Sbjct: 221 GKESNEDLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLINSEKRTCAAIV 280
Query: 391 F 393
F
Sbjct: 281 F 281
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 271 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 450
G L E I ++S G + RV+M + + FV Y + +A N MR +NG
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERVVMLPQR------SYSFVSYKSHNNALNAMRNLNGK 108
Query: 451 RLDD 462
LD+
Sbjct: 109 ALDE 112
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = +1
Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 414
+K +K S L L F+ + + +++S G + V + K+ GF F+E+ +++
Sbjct: 82 KKAMKLSQQLE-EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQ 140
Query: 415 DAENCMRYIN 444
AE+ ++ N
Sbjct: 141 QAEHVVQMFN 150
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408
+Q++ + T++IG L E I E++ CG+I + + K + FC + + A
Sbjct: 342 KQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENAR-KFCHLRFGA 400
Query: 409 REDAENCMRYINGTRLDDR 465
+E + + + +G RL R
Sbjct: 401 KESVDTAVLF-SGYRLYTR 418
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441
LYIGNL+F + E +I + + G + +V + DK GF FV + + + +
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 442 NGTRLDDRIIRCDWDAGFIEGR-QYGRGKTGGQ 537
N + + R I E R GR + GG+
Sbjct: 70 NQSSVGGRNITVALALDKTENRGGGGRRERGGR 102
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423
+ S+ +Y G L E + + G +R + M L G+ FVE+ DA+
Sbjct: 1 MSRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL--------GYGFVEFDDYRDAD 52
Query: 424 NCMRYINGTR-LDDRIIRC 477
+C+ +NG L +R I C
Sbjct: 53 DCVYDLNGRNLLGEREIAC 71
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +1
Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423
L++G + + + ++ + + +++ G+IR ++ D+ K G+ FV + AE
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAE 65
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 673 PCKIYNPY*LQHIINVLGYL-GLFSVLLFFHNRHAHRHSQFDI 548
PC + PY + H+ ++GY+ + + LLF + H R + + I
Sbjct: 640 PCAMAVPYHVHHVFLLMGYINSMVNPLLFSYQNHQFRKAYWKI 682
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = +1
Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426
++ + ++IG + E+++ L +CG+IR + +D GF F + + A
Sbjct: 150 ESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQ 209
Query: 427 CMRYIN 444
+ +N
Sbjct: 210 AITTLN 215
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIR-RVIMGLDKYKKTPCGFCFVEYYARE 414
A YIGNLS+ E+ + E + C + RVI D+ P GF FV A++
Sbjct: 80 AEHRCYIGNLSYSVDEQALEEKFHDCNVVDVRVI--TDRETGRPRGFGFVTLEAKK 133
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 310 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 459
EL+S G ++R + D ++ G V + REDA+ ++ NG LD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSH-GTAEVVFVRREDAQQALKQYNGVPLD 49
>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -2
Query: 606 FLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSVIQPRAIYIPHT 427
F C + + SS+ S ++ TT++ + SI T N++ I +++
Sbjct: 44 FACKLHGVLVMAFSVASSLSASAMSINRYTTIIYASKQKSITFTRNWTKIMLAFLWLFSA 103
Query: 426 IFGIFP-----RIVFYKTKSTRCFLVF 361
IF I P R ++ K+ CF+ +
Sbjct: 104 IFAILPLVGWSRYTYFPAKAI-CFISY 129
>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 507 STFNESSIPVTANYSVIQPR 448
ST+N+ + P++A Y VI+PR
Sbjct: 465 STYNDDTSPISATYKVIEPR 484
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 241 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 420
L ++ T+++G+L T E I+E +S G+ + + GF FV +E
Sbjct: 37 LEQSRRTIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAV 96
Query: 421 ENCM 432
E+ +
Sbjct: 97 ESVL 100
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCG--DIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426
S+ +Y+G L + T E+ + + + G IR +I+ G+ FVE+ +DAE+
Sbjct: 2 SNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIIL--------KDGYGFVEFDYSDDAED 53
Query: 427 CMRYINGTRL 456
+ NG ++
Sbjct: 54 AVYECNGKKM 63
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 328 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480
G+I V + DK GFCF+ Y + + NG +L R IR D
Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 621 GIWVYFLCYYFSITATPTVIVSSIFISNLASCFATTVLSTFNE 493
GIW YF+ Y + P+V +S++ ++ AS F + NE
Sbjct: 719 GIWDYFIKSYHELLEKPSVSISTVALT-AASSFVYFAKLSMNE 760
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -1
Query: 460 HPASCHLYT--SYNFRHLPAHSILQ-NKIHKVFSC-ICLVPLLLFLYRRIVNTVH 308
HP H Y S RHLP+H ILQ + I++ S I +P + Y + T H
Sbjct: 704 HPPVSHTYRHKSAGIRHLPSHIILQVSHIYRHTSAGISHLPSQIRRYPTLTTTHH 758
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 232 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411
+EKL K + LYI L TT++ + L + G I LDK G+ FV++ +
Sbjct: 94 EEKLSKTN--LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESP 151
Query: 412 EDAENCM 432
A+ +
Sbjct: 152 ISAQKAV 158
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +1
Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSR----CGDIRRVIMGLDKY--KKTPC--G 384
+Q+ + + +Y GNL F T++++ ++ D+ V +++ ++ P G
Sbjct: 41 DQKMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRG 100
Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIR 474
F FV + EDA+ ++ +NG + R ++
Sbjct: 101 FGFVTFANPEDAQTAVKSLNGKEVQGRTLK 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,421,921
Number of Sequences: 59808
Number of extensions: 411156
Number of successful extensions: 1057
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -