BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_F04 (736 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 175 2e-44 At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 58 6e-09 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 58 6e-09 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 58 6e-09 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 56 2e-08 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 54 1e-07 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 53 2e-07 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 53 2e-07 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 7e-07 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 51 7e-07 At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 50 2e-06 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 48 5e-06 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 9e-06 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 9e-06 At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 48 9e-06 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 47 1e-05 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 46 2e-05 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 46 2e-05 At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 46 2e-05 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 46 2e-05 At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 46 3e-05 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 46 3e-05 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 45 5e-05 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 45 6e-05 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 45 6e-05 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 45 6e-05 At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 44 8e-05 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 44 1e-04 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 44 1e-04 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 44 1e-04 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 2e-04 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 43 2e-04 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 43 2e-04 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 43 2e-04 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 43 2e-04 At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04 At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04 At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 43 2e-04 At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 2e-04 At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 43 2e-04 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 2e-04 At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 43 2e-04 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 43 2e-04 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 42 3e-04 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 3e-04 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 4e-04 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 4e-04 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 42 4e-04 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 6e-04 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 42 6e-04 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 6e-04 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 41 7e-04 At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 7e-04 At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 41 7e-04 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 41 0.001 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 0.001 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 0.001 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 40 0.001 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.001 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 0.001 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 0.001 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 40 0.001 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 0.002 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 40 0.002 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.002 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 40 0.002 At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.002 At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 40 0.002 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.004 At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.004 At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 39 0.004 At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.004 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.005 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 38 0.005 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 38 0.005 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.005 At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.005 At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 38 0.005 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.007 At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.007 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.007 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.009 At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 38 0.009 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.012 At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 37 0.016 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 37 0.016 At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 36 0.021 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.021 At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 36 0.028 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.028 At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 36 0.037 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 36 0.037 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 36 0.037 At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.037 At5g24440.1 68418.m02880 RNA-binding protein, putative 35 0.064 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.064 At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 34 0.085 At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 34 0.085 At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 34 0.085 At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 34 0.085 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 34 0.085 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 34 0.11 At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.11 At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.11 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 34 0.11 At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 33 0.15 At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 33 0.15 At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 33 0.15 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.20 At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.20 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.20 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.20 At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 33 0.26 At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.26 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.26 At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.26 At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 33 0.26 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.26 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.34 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.34 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.34 At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.34 At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.34 At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.60 At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.60 At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 0.60 At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 0.60 At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 31 0.60 At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 0.79 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 1.0 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 31 1.0 At5g54020.1 68418.m06719 expressed protein 30 1.4 At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.4 At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.4 At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 30 1.4 At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 30 1.8 At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 1.8 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 30 1.8 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 30 1.8 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 30 1.8 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 1.8 At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 1.8 At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 2.4 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 2.4 At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 29 2.4 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 2.4 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 2.4 At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 29 2.4 At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 29 2.4 At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi... 29 3.2 At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-... 29 3.2 At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-... 29 3.2 At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 4.2 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 4.2 At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 29 4.2 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 4.2 At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 5.6 At4g30870.1 68417.m04383 repair endonuclease family protein cont... 28 5.6 At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 28 5.6 At1g62400.1 68414.m07040 protein kinase, putative similar to pro... 28 5.6 At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 7.4 At5g57670.1 68418.m07207 protein kinase family protein contains ... 28 7.4 At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 28 7.4 At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 7.4 At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 9.8 At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 27 9.8 At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 27 9.8 At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 27 9.8 At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi... 27 9.8 At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 9.8 >At5g44200.1 68418.m05408 nuclear cap-binding protein, putative similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens}; non-consensus AT donor splice site at exon 4, AC acceptor splice site at exon 5; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 257 Score = 175 bits (427), Expect = 2e-44 Identities = 75/119 (63%), Positives = 103/119 (86%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 ++S+YRD+ F G++ E ++ L+AS+T+YIGN+SFYTTEEQ+YEL+SR G+I+++IMGLDK Sbjct: 10 KLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDK 69 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 540 KTPCGFCFV +Y+RED E+ ++YI+GT LDDR IR D+D GF EGRQ+GRG++GGQV Sbjct: 70 NTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQV 128 >At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing protein Length = 116 Score = 58.0 bits (134), Expect = 6e-09 Identities = 25/76 (32%), Positives = 48/76 (63%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 SSTL++ +SF +TEE + + +S+ G + +V + +DK + P GF +V + ++E+AE + Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79 Query: 433 RYINGTRLDDRIIRCD 480 +N +D R++ D Sbjct: 80 LELNAQLVDGRVVILD 95 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 58.0 bits (134), Expect = 6e-09 Identities = 25/87 (28%), Positives = 50/87 (57%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 KG+ S +K ++ S L++ +LS E + E++ G++ V + +D+ P G + Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143 Query: 394 VEYYAREDAENCMRYINGTRLDDRIIR 474 VE+ AR DAE Y++G ++D ++++ Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVK 170 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 58.0 bits (134), Expect = 6e-09 Identities = 25/87 (28%), Positives = 50/87 (57%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 KG+ S +K ++ S L++ +LS E + E++ G++ V + +D+ P G + Sbjct: 84 KGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGY 143 Query: 394 VEYYAREDAENCMRYINGTRLDDRIIR 474 VE+ AR DAE Y++G ++D ++++ Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVK 170 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 56.4 bits (130), Expect = 2e-08 Identities = 26/77 (33%), Positives = 45/77 (58%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 +S L+IG LSF TTE+ + E +S+CG + + +D+ GF FV + + ++A+ + Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92 Query: 433 RYINGTRLDDRIIRCDW 483 NG +L+ R I D+ Sbjct: 93 MEFNGQQLNGRTIFVDY 109 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 53.6 bits (123), Expect = 1e-07 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Frame = +1 Query: 169 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI 348 M + E Q G S EK S ++Y+GN+ + T E++ + + CG + RV Sbjct: 74 MQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVT 133 Query: 349 MGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQY-GRG 522 + DK+ + P GF +VE+ E +N + +N + L R I+ + G RQ+ GRG Sbjct: 134 ILTDKFGQ-PKGFAYVEFVEVEAVQNSL-ILNESELHGRQIKVSAKRTNVPGMRQFRGRG 191 Query: 523 K 525 + Sbjct: 192 R 192 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 53.2 bits (122), Expect = 2e-07 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LY+ LSF TTE+ + + + + G++ + M +DK P GF F+ Y E+A ++ + Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138 Query: 442 NGTRLDDRII 471 +G LD R+I Sbjct: 139 HGKFLDGRVI 148 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 52.8 bits (121), Expect = 2e-07 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +++ + NLS T E + EL+ G + RV + +D+ GF FV + +REDA+ + Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272 Query: 436 YINGTRLDDRIIRCDW 483 +NG D+ I+R +W Sbjct: 273 KLNGYGYDNLILRVEW 288 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 51.2 bits (117), Expect = 7e-07 Identities = 30/108 (27%), Positives = 54/108 (50%) Frame = +1 Query: 157 SYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI 336 S++S+N E S +D + + E + L+I LSFYT+E+ + + G++ Sbjct: 252 SFESLNKDYEGDSTQDSR---DQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGEL 308 Query: 337 RRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 V + +DK K G+ F+EY E A ++ +NG ++ +I D Sbjct: 309 VEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVD 356 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 51.2 bits (117), Expect = 7e-07 Identities = 26/91 (28%), Positives = 48/91 (52%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A +LY+G+L F T+ Q+Y+ ++ + V + D T G+ +V Y +DAE Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKA 103 Query: 430 MRYINGTRLDDRIIRCDWDAGFIEGRQYGRG 522 M+ +N + L+ ++IR + + R+ G G Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVG 134 Score = 42.3 bits (95), Expect = 3e-04 Identities = 21/70 (30%), Positives = 38/70 (54%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + +Y+ NLS TT++++ + + G I ++ D K+ C F FV + EDA + Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRC-FGFVNFENPEDAARAVE 283 Query: 436 YINGTRLDDR 465 +NG + DD+ Sbjct: 284 ALNGKKFDDK 293 Score = 36.3 bits (80), Expect = 0.021 Identities = 19/70 (27%), Positives = 37/70 (52%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++ NL + ++E +S CG I + D ++ G+ FV++ + A+N + + Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSR-GYGFVQFDTEDSAKNAIEKL 194 Query: 442 NGTRLDDRII 471 NG L+D+ I Sbjct: 195 NGKVLNDKQI 204 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LY+ NL T+E++ EL++ G I + D T G FV + A +A + + Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388 Query: 442 NG 447 NG Sbjct: 389 NG 390 >At1g66260.1 68414.m07522 RNA and export factor-binding protein, putative similar to GI:7159943 from [Mus musculus] (RNA 6 (4), 638-650 (2000)) Length = 295 Score = 49.6 bits (113), Expect = 2e-06 Identities = 28/79 (35%), Positives = 41/79 (51%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 ++ +T+YI NL T E I ELY+ G+++R + DK + P G V Y R DA Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 161 Query: 424 NCMRYINGTRLDDRIIRCD 480 MR N LD R ++ + Sbjct: 162 QAMRKYNNVLLDGRPMKLE 180 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 48.4 bits (110), Expect = 5e-06 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 11/133 (8%) Frame = +1 Query: 118 IIEK*EQAYKMKRSYDSMNSSIEISSYRDQHFKGS--------RSEQEKLLKASSTLYIG 273 +I K + +Y +D ++++ I S +H G + Q + + +++G Sbjct: 90 LIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVG 149 Query: 274 NLSFYTTEEQIYE---LYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 +LS T+ +Y+ ++S C D R +M K ++ GF FV + ++DA+ + +N Sbjct: 150 DLSPEVTDATLYQSFSVFSSCSDAR--VMWDQKTGRSR-GFGFVSFRNQQDAQTAINEMN 206 Query: 445 GTRLDDRIIRCDW 483 G L R IRC+W Sbjct: 207 GKWLSSRQIRCNW 219 Score = 28.3 bits (60), Expect = 5.6 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 +T+Y+GNL+ T+ ++ + G I V + DK GF FV Y +A Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK------GFGFVRYNTHPEAALA 318 Query: 430 MRYIN-GTRLDDRIIRCDW 483 ++ N L +R I+C W Sbjct: 319 IQMGNTQPYLFNRQIKCSW 337 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 47.6 bits (108), Expect = 9e-06 Identities = 24/95 (25%), Positives = 51/95 (53%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 +SS L+IG +++ E+ + E +++ G++ + LD+ GF FV + + E A + Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97 Query: 430 MRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 ++ ++G L R+++ ++ G +G G GG Sbjct: 98 IQALDGRDLHGRVVKVNYANDRTSGGGFGGGGYGG 132 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 47.6 bits (108), Expect = 9e-06 Identities = 23/76 (30%), Positives = 41/76 (53%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +++ + NLS T + EL+ G + R + +D+ GF FV + +REDA+ + Sbjct: 174 NSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAIN 233 Query: 436 YINGTRLDDRIIRCDW 483 +NG D+ I+R +W Sbjct: 234 KLNGYGYDNLILRVEW 249 >At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 140 Score = 47.6 bits (108), Expect = 9e-06 Identities = 24/93 (25%), Positives = 48/93 (51%) Frame = +1 Query: 187 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 366 +S R + SRS ++ +TLY+ LS T++ + +++ G + + ++ Sbjct: 48 VSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPR 107 Query: 367 KKTPCGFCFVEYYAREDAENCMRYINGTRLDDR 465 + GF FV + +DAE C++Y+N + L+ R Sbjct: 108 TRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 46.8 bits (106), Expect = 1e-05 Identities = 23/71 (32%), Positives = 41/71 (57%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++ +Y+GNLS TT++ + E +S G++ I+ D+Y GF FV Y + +AE + Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61 Query: 433 RYINGTRLDDR 465 ++G L+ R Sbjct: 62 SGMDGKELNGR 72 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 46.4 bits (105), Expect = 2e-05 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 E+ + +D + E ++ + A S +Y+GN+ + T E++ + CG + RV + +DK Sbjct: 66 EMGATQDPASMAANQEGKEEVDARS-VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQYGRGK 525 + + P GF +VE+ E + ++ +N + L R ++ + G +QY G+ Sbjct: 125 FGQ-PKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKRTNVPGMKQYHPGR 177 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 46.4 bits (105), Expect = 2e-05 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 E+ + +D + E ++ + A S +Y+GN+ + T E++ + CG + RV + +DK Sbjct: 66 EMGATQDPASMAANQEGKEEVDARS-VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDK 124 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG-RQYGRGK 525 + + P GF +VE+ E + ++ +N + L R ++ + G +QY G+ Sbjct: 125 FGQ-PKGFAYVEFVEVEAVQEALQ-LNESELHGRQLKVSPKRTNVPGMKQYHPGR 177 >At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 674 Score = 46.4 bits (105), Expect = 2e-05 Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Frame = +1 Query: 175 SSIEISSYRDQHFKGSRSEQEKLLKASS-TLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 351 +S++ S ++ G+ S L ASS T+++ N+ F T++ + +++ G++ + + Sbjct: 488 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 547 Query: 352 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 474 D P G ++E+ +E AEN + ++GT RI++ Sbjct: 548 VTDPATGQPSGSAYIEFTRKEAAENALS-LDGTSFMSRILK 587 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 46.4 bits (105), Expect = 2e-05 Identities = 21/73 (28%), Positives = 41/73 (56%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +T+Y+G L +EE ++EL+ + G + V + D+ + F+EY + EDA+ ++ Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84 Query: 436 YINGTRLDDRIIR 474 +N +L + IR Sbjct: 85 VLNMIKLHGKPIR 97 >At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris] Length = 289 Score = 46.0 bits (104), Expect = 3e-05 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Frame = +1 Query: 193 SYRDQHFKGSRSEQEKL-LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK 369 S H S S + + +SS +++G +S+ T E + E +S+ G++ + +D+ Sbjct: 12 SQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRET 71 Query: 370 KTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW----DAGFIEGRQYGRGKTGG 534 GF FV + + E+A N M+ ++G L R IR ++ +GF GR +G G GG Sbjct: 72 GRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSGF-GGRGFG-GPGGG 127 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 45.6 bits (103), Expect = 3e-05 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%) Frame = +1 Query: 94 VDSCILLLIIEK*EQAYKMKRSYDSMNSSIEISSYRDQHFKGS--------RSEQEKLLK 249 V+SC L I K + +Y +D ++ + I S +H G S Q + Sbjct: 80 VESCKL---IRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTS 136 Query: 250 ASSTLYIGNLSFYTTEEQIY---ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 420 + +++G+LS T+ ++ +Y C D R +M K ++ GF FV + ++DA Sbjct: 137 SHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR--VMWDQKTGRSR-GFGFVSFRNQQDA 193 Query: 421 ENCMRYINGTRLDDRIIRCDW 483 + + I G L R IRC+W Sbjct: 194 QTAIDEITGKWLGSRQIRCNW 214 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 45.2 bits (102), Expect = 5e-05 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 L+ TL+IG+L ++ E + +S+ G++ V + +K P G+ F+E+ + AE Sbjct: 20 LEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAE 79 Query: 424 NCMRYINGTRL--DDRIIRCDWDAGFIEGRQYGRG 522 ++ NGT++ + R +W A F G++ G Sbjct: 80 RTLQTYNGTQMPGTELTFRLNW-ASFGSGQKVDAG 113 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 44.8 bits (101), Expect = 6e-05 Identities = 23/80 (28%), Positives = 40/80 (50%) Frame = +1 Query: 232 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411 +EK A++T+ + L + T Q+ E +S G +RR + +K GF FV++ + Sbjct: 12 EEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQ 71 Query: 412 EDAENCMRYINGTRLDDRII 471 ED + NG+ + R I Sbjct: 72 EDVNRAIELKNGSTVGGRRI 91 Score = 41.1 bits (92), Expect = 7e-04 Identities = 23/74 (31%), Positives = 34/74 (45%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L I NL F I ++S G + V + + P GF FV++ ++DA N ++ Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392 Query: 442 NGTRLDDRIIRCDW 483 NG R I DW Sbjct: 393 NGHMFGKRPIAVDW 406 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 44.8 bits (101), Expect = 6e-05 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 11/161 (6%) Frame = +1 Query: 79 SSQNLVDSCILLLIIEK*EQAYKMKRSYDSMNSSIEISSYRDQHFKGSRSE--------Q 234 +S ++SC L I K + +Y +D +S+ I + +H G + Q Sbjct: 84 ASTGPIESCKL---IRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140 Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 414 + + +++G+LS T+ +++ +S + D+ GF FV + ++ Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200 Query: 415 DAENCMRYINGTRLDDRIIRCDW---DAGFIEGRQYGRGKT 528 DA+ + +NG + R IRC+W A F E + GK+ Sbjct: 201 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 241 Score = 33.9 bits (74), Expect = 0.11 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 +T+Y+GNLS T+ ++ L+ G I V + DK GF FV Y ++A Sbjct: 269 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------GFGFVRYNTHDEAALA 322 Query: 430 MRYINGTR-LDDRIIRCDW 483 ++ N L R IRC W Sbjct: 323 IQMGNAQPFLFSRQIRCSW 341 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 44.8 bits (101), Expect = 6e-05 Identities = 36/131 (27%), Positives = 61/131 (46%) Frame = +1 Query: 145 KMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 324 K +Y N S ++ GS S+ E +ST+++G L TEE + + +S Sbjct: 293 KRAAAYGQQNGSQALTLAGGHGGNGSMSDGES---NNSTIFVGGLDADVTEEDLMQPFSD 349 Query: 325 CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEG 504 G++ V + + K CGF V++ R+ AE + +NGT + +R W G Sbjct: 350 FGEVVSVKIPVGK----GCGF--VQFANRQSAEEAIGNLNGTVIGKNTVRLSW--GRSPN 401 Query: 505 RQYGRGKTGGQ 537 +Q+ R +G Q Sbjct: 402 KQW-RSDSGNQ 411 >At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 141 Score = 44.4 bits (100), Expect = 8e-05 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Frame = +1 Query: 187 ISSYRDQHFKGSRSE-QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 +S R + SRS + ++ +TLY+ LS T++ + +++ G + + ++ Sbjct: 48 VSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEP 107 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDR 465 + GF FV + +DAE C++Y+N + L+ R Sbjct: 108 RTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 44.0 bits (99), Expect = 1e-04 Identities = 24/84 (28%), Positives = 42/84 (50%) Frame = +1 Query: 232 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411 Q++ +TLY+G L+ E ++ + GDI+ V LD+ + F FV + R Sbjct: 5 QQQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLER 64 Query: 412 EDAENCMRYINGTRLDDRIIRCDW 483 EDA M ++G L R++ ++ Sbjct: 65 EDASAAMDNMDGAELYGRVLTVNY 88 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 43.6 bits (98), Expect = 1e-04 Identities = 22/89 (24%), Positives = 48/89 (53%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 ++++GN+ + T E++ + + CG + RV + DK+ + P GF +VE+ E + ++ Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQ-PKGFAYVEFVEVEAVQEALQ- 150 Query: 439 INGTRLDDRIIRCDWDAGFIEGRQYGRGK 525 +N + L R ++ + G + RG+ Sbjct: 151 LNESELHGRQLKVLQKRTNVPGLKQFRGR 179 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 43.6 bits (98), Expect = 1e-04 Identities = 24/81 (29%), Positives = 46/81 (56%) Frame = +1 Query: 205 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 384 + FK EQ+ + K S+ +Y+ N++ TEE++ + +S+CG I + D+ K+ G Sbjct: 288 EQFKEKHEEQKMIAKVSN-IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK-G 345 Query: 385 FCFVEYYAREDAENCMRYING 447 F FV + E+A + ++ +G Sbjct: 346 FGFVCFSTPEEAIDAVKTFHG 366 Score = 34.7 bits (76), Expect = 0.064 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = +1 Query: 223 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC-GFCFVE 399 ++++ K + + LY+ NL +E+ + E ++ G I V + + K + C G+ FV Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVN 247 Query: 400 YYAREDAENCMRYINGTRLDDRII 471 + EDA +NGT+ + + Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCL 271 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 42.7 bits (96), Expect = 2e-04 Identities = 19/72 (26%), Positives = 41/72 (56%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 ++LYI NL +EE ++ ++S G + R ++ D ++ GF F+E+ + + A M Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAML 75 Query: 436 YINGTRLDDRII 471 +++G + +I+ Sbjct: 76 HMDGRLIGQKIL 87 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +1 Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT-PCGFCFVEYY 405 E+E++ L++G+L+ TE+++ E++ + G + V + D+Y+++ CG FV+Y Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCG--FVKYS 259 Query: 406 AREDAENCMRYINGT 450 ++E A + +NGT Sbjct: 260 SKETAMAAIDGLNGT 274 Score = 38.7 bits (86), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++G++ TEE+I + + G++ V + DK G CFV+Y +DA+ +R + Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181 Query: 442 N 444 + Sbjct: 182 H 182 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +1 Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT-PCGFCFVEYY 405 E+E++ L++G+L+ TE+++ E++ + G + V + D+Y+++ CG FV+Y Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCG--FVKYS 259 Query: 406 AREDAENCMRYINGT 450 ++E A + +NGT Sbjct: 260 SKETAMAAIDGLNGT 274 Score = 38.7 bits (86), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++G++ TEE+I + + G++ V + DK G CFV+Y +DA+ +R + Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181 Query: 442 N 444 + Sbjct: 182 H 182 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 42.7 bits (96), Expect = 2e-04 Identities = 25/97 (25%), Positives = 47/97 (48%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 ++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++ Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60 Query: 427 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 + +G D +R + G RG G+ Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGR 97 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 42.7 bits (96), Expect = 2e-04 Identities = 25/97 (25%), Positives = 47/97 (48%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 ++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++ Sbjct: 4 RSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADD 60 Query: 427 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 + +G D +R + G RG G+ Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGR 97 >At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 42.7 bits (96), Expect = 2e-04 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ + Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306 Query: 442 NGTRLDDRIIRC 477 + T + I+ C Sbjct: 307 HKT-FEGHILHC 317 >At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 42.7 bits (96), Expect = 2e-04 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ + Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306 Query: 442 NGTRLDDRIIRC 477 + T + I+ C Sbjct: 307 HKT-FEGHILHC 317 >At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 42.7 bits (96), Expect = 2e-04 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+ N+ +++ +S+ G+I +GLDKY P GFC Y + E A+ + Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEP 306 Query: 442 NGTRLDDRIIRC 477 + T + I+ C Sbjct: 307 HKT-FEGHILHC 317 >At1g71800.1 68414.m08298 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB:AAD47839 GI:5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 461 Score = 42.7 bits (96), Expect = 2e-04 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +++GN+ + TEEQ+ E+ G + + D+ P G+ F EY E A + R + Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70 Query: 442 NGTRLDDRIIRCDW---DAGFIEGRQYGRGKTG 531 ++ R +R D+ D G + R +G G Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQSQGGPG 103 >At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. Length = 258 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++GNLS+ T E + + CGD+ + D G+ FV Y ++ + E + + Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238 Query: 442 NGTRLDDRIIRCDWDAG 492 +G L+ R IR + G Sbjct: 239 DGFELEGRAIRVNLAQG 255 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 42.7 bits (96), Expect = 2e-04 Identities = 30/106 (28%), Positives = 54/106 (50%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 +RSE + + ++T+++G L T+E + + +S G+I V + + K CGF V+ Sbjct: 297 TRSEGDTI---NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK----GCGF--VQ 347 Query: 400 YYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 + R +AE + +NGT + + +R W G + R K G Q Sbjct: 348 FVNRPNAEEALEKLNGTVIGKQTVRLSW--GRNPANKQPRDKYGNQ 391 Score = 29.1 bits (62), Expect = 3.2 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Frame = +1 Query: 208 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL--DKYKKTPC 381 H Q + T+++G+L + E + ++ + V + + +K+ + Sbjct: 87 HQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSE 146 Query: 382 GFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 510 G+ FVE+ + + A+ ++ NG + D+ R +W A F G + Sbjct: 147 GYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNW-ASFSTGEK 190 >At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein from {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum sativum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 155 Score = 42.7 bits (96), Expect = 2e-04 Identities = 27/80 (33%), Positives = 38/80 (47%) Frame = +1 Query: 232 QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 411 Q L S +++G LS T E + E + G I ++ LD+ GF FV Y + Sbjct: 28 QGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSI 87 Query: 412 EDAENCMRYINGTRLDDRII 471 E A N M+ + LD RII Sbjct: 88 EVANNAMQAMQNKELDGRII 107 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 42.7 bits (96), Expect = 2e-04 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 ++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60 Query: 427 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 + +G D +R + G RG G Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 42.7 bits (96), Expect = 2e-04 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 ++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60 Query: 427 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 + +G D +R + G RG G Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 42.7 bits (96), Expect = 2e-04 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 ++S T+Y+GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAED 60 Query: 427 CMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 + +G D +R + G RG G Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNG 96 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 42.3 bits (95), Expect = 3e-04 Identities = 22/79 (27%), Positives = 43/79 (54%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 ++ + LYI NL + + E I EL+S GD++R + D+ ++ G V + R DA Sbjct: 104 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSK-GTAEVVFSRRGDAL 162 Query: 424 NCMRYINGTRLDDRIIRCD 480 ++ N +LD ++++ + Sbjct: 163 AAVKRYNNVQLDGKLMKIE 181 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 42.3 bits (95), Expect = 3e-04 Identities = 24/88 (27%), Positives = 43/88 (48%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 + + +Y+GNLS+ + + L+S G + + D+ GF FV Y + ++ +N Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261 Query: 430 MRYINGTRLDDRIIRCDWDAGFIEGRQY 513 ++ ++G LD R IR RQY Sbjct: 262 IKSLDGADLDGRQIRVSEAEARPPRRQY 289 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 41.9 bits (94), Expect = 4e-04 Identities = 21/77 (27%), Positives = 43/77 (55%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++T+++G L T++++ ++ + G++ V + K CGF V+Y + AE+ + Sbjct: 259 NTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKR----CGF--VQYANKASAEHAL 312 Query: 433 RYINGTRLDDRIIRCDW 483 +NGT+L + IR W Sbjct: 313 SVLNGTQLGGQSIRLSW 329 Score = 34.3 bits (75), Expect = 0.085 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = +1 Query: 205 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 384 QH G S+ +L+IG+L + E I ++++ G+ + +K G Sbjct: 43 QHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEG 102 Query: 385 FCFVEYYAREDAENCMRYINGTRL--DDRIIRCDW-DAGFIEGR 507 + F+E+ + AE ++ NG + ++ R +W AG E R Sbjct: 103 YGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKR 146 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 41.9 bits (94), Expect = 4e-04 Identities = 19/74 (25%), Positives = 39/74 (52%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LY+GNL + T ++ +++ G + V + DK GF FV + E+A+ M+ Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177 Query: 442 NGTRLDDRIIRCDW 483 N +++ R ++ ++ Sbjct: 178 NSSQIGGRTVKVNF 191 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 41.9 bits (94), Expect = 4e-04 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +1 Query: 289 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 468 T EE I + G+I+ + + LD+ G+ +EY +E+A++ + +NG L + Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165 Query: 469 IRCDW--DAGFIEGRQYGR 519 + DW +G G Y R Sbjct: 166 VSVDWAFSSGPSGGESYRR 184 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 41.5 bits (93), Expect = 6e-04 Identities = 21/70 (30%), Positives = 35/70 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++ NL + TEE++ E +S G I V + LDK K G ++ Y E A M + Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322 Query: 442 NGTRLDDRII 471 + + R++ Sbjct: 323 DNSSFQGRLL 332 Score = 37.5 bits (83), Expect = 0.009 Identities = 18/79 (22%), Positives = 41/79 (51%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 K + L++ N++F T+ ++ +L+S G I+ + + + G+ FVE+ +++A N Sbjct: 666 KPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQY-AGYAFVEFVTKQEALN 724 Query: 427 CMRYINGTRLDDRIIRCDW 483 + + T R + +W Sbjct: 725 AKKALASTHFYGRHLVLEW 743 Score = 33.9 bits (74), Expect = 0.11 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI-MGLDKYKKT----PCGFCFVEYYARED 417 S+ L + NLSF TT+E + + +++ +++ + + K+KK G+ FVE+ + E Sbjct: 568 SNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVET 627 Query: 418 AENCMRYINGTRLD 459 A + R + GT LD Sbjct: 628 ATSVYRDLQGTVLD 641 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 41.5 bits (93), Expect = 6e-04 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 +A+ +YIGN+ T EQ+ +L G + +V + DKY F F + EDA Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132 Query: 427 CMRYINGTRLDDRIIR 474 + +NG ++ R I+ Sbjct: 133 VVEKLNGNTVEGREIK 148 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 41.5 bits (93), Expect = 6e-04 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Frame = +1 Query: 79 SSQNLVDSCILLLIIEK*EQAYKMKRSYDSMNSSIEISSYRDQHFKGSRSE--------Q 234 +S ++SC L I K + +Y +D +S+ I + +H G + Q Sbjct: 84 ASTGPIESCKL---IRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ 140 Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYSR---CGDIRRVIMGL-DKYKKTPCGFCFVEY 402 + + +++G+LS T+ +++ +S C R + D+ GF FV + Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200 Query: 403 YAREDAENCMRYINGTRLDDRIIRCDW---DAGFIEGRQYGRGKT 528 ++DA+ + +NG + R IRC+W A F E + GK+ Sbjct: 201 RNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKS 245 Score = 33.9 bits (74), Expect = 0.11 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSR--CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 +T+Y+GNLS T+ ++ L+ G I V + DK GF FV Y ++A Sbjct: 273 TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------GFGFVRYNTHDEAALA 326 Query: 430 MRYINGTR-LDDRIIRCDW 483 ++ N L R IRC W Sbjct: 327 IQMGNAQPFLFSRQIRCSW 345 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 41.1 bits (92), Expect = 7e-04 Identities = 26/95 (27%), Positives = 48/95 (50%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++T+++G L T+E + + ++ G+I V + + K CGF V++ R +AE + Sbjct: 303 NTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK----GCGF--VQFVNRPNAEEAL 356 Query: 433 RYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 +NGT + + +R W G + R K G Q Sbjct: 357 EKLNGTVIGKQTVRLSW--GRNPANKQPRDKYGNQ 389 Score = 32.7 bits (71), Expect = 0.26 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Frame = +1 Query: 208 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI---MGLDKYKKTP 378 H Q + T+++G+L + E + ++ GD R ++ + +K Sbjct: 85 HQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLS 143 Query: 379 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 510 G+ FVE+ + + A+ +R NGT + D+ R +W A F G + Sbjct: 144 EGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTGEK 188 >At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 129 Score = 41.1 bits (92), Expect = 7e-04 Identities = 22/84 (26%), Positives = 42/84 (50%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 +RS ++LY+ LS TE + + +++ G + V + LD + + GF F+ Sbjct: 33 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 92 Query: 400 YYAREDAENCMRYINGTRLDDRII 471 + DA C+R ++ + L R+I Sbjct: 93 MKSVGDANRCIRSLDHSVLQGRVI 116 >At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 382 Score = 41.1 bits (92), Expect = 7e-04 Identities = 22/84 (26%), Positives = 42/84 (50%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 +RS ++LY+ LS TE + + +++ G + V + LD + + GF F+ Sbjct: 63 TRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFIS 122 Query: 400 YYAREDAENCMRYINGTRLDDRII 471 + DA C+R ++ + L R+I Sbjct: 123 MKSVGDANRCIRSLDHSVLQGRVI 146 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 40.7 bits (91), Expect = 0.001 Identities = 29/107 (27%), Positives = 57/107 (53%) Frame = +1 Query: 217 GSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFV 396 GS+S+ E ++T+++G + +E + + +S+ G++ V + + K CGF V Sbjct: 311 GSQSDGES---TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK----GCGF--V 361 Query: 397 EYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 537 ++ R+ AE+ + +NGT + +R W G +Q+ RG +G Q Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSW--GRSPNKQW-RGDSGQQ 405 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 40.3 bits (90), Expect = 0.001 Identities = 25/99 (25%), Positives = 49/99 (49%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 ++ S R + + RS ++ + LYI NL + E I EL++ G+++R + D+ Sbjct: 64 DMFSDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR 121 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 ++ G V Y R DA ++ N +LD + ++ + Sbjct: 122 SGRSK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 159 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 40.3 bits (90), Expect = 0.001 Identities = 25/99 (25%), Positives = 49/99 (49%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 ++ S R + + RS ++ + LYI NL + E I EL++ G+++R + D+ Sbjct: 66 DMFSDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR 123 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 ++ G V Y R DA ++ N +LD + ++ + Sbjct: 124 SGRSK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 161 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/88 (26%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGN--LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGF 387 + S S++ +L+ + + N LS YTT++ + +L++ R+I D+ + P GF Sbjct: 55 RSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFA---PFARLIK--DQQTQRPKGF 109 Query: 388 CFVEYYAREDAENCMRYINGTRLDDRII 471 F+ + + +DA+ ++ +NG ++ R+I Sbjct: 110 GFITFESEDDAQKALKALNGKIVNGRLI 137 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 40.3 bits (90), Expect = 0.001 Identities = 25/93 (26%), Positives = 48/93 (51%) Frame = +1 Query: 205 QHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG 384 Q+ +G+ E + ++T+++G + TE+ + ++ + G++ V + K CG Sbjct: 264 QNTQGNSGESDP---TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR----CG 316 Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F V+Y R AE + +NGT+L + IR W Sbjct: 317 F--VQYANRACAEQALSVLNGTQLGGQSIRLSW 347 Score = 29.9 bits (64), Expect = 1.8 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 3/107 (2%) Frame = +1 Query: 199 RDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 378 + Q + G S+ +L+IG+L + E + ++ G+ + +K Sbjct: 61 QQQQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120 Query: 379 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDW-DAGFIEGRQ 510 G+ F+E+ AE ++ NG + ++ R +W G E RQ Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQ 167 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 40.3 bits (90), Expect = 0.001 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++GNLSF Q+ +L+ G++ V + DK GF FV + E + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 442 NGTRLDDRIIR 474 NG + R +R Sbjct: 161 NGYEFEGRPLR 171 Score = 37.9 bits (84), Expect = 0.007 Identities = 20/75 (26%), Positives = 37/75 (49%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 + + LY+GNLS+ + + L++ G + + D+ GF FV + ++ + Sbjct: 247 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 306 Query: 430 MRYINGTRLDDRIIR 474 + +NG LD R IR Sbjct: 307 INSLNGADLDGRQIR 321 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 40.3 bits (90), Expect = 0.001 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++GNLSF Q+ +L+ G++ V + DK GF FV + E + Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 442 NGTRLDDRIIR 474 NG + R +R Sbjct: 161 NGYEFEGRPLR 171 Score = 37.9 bits (84), Expect = 0.007 Identities = 20/75 (26%), Positives = 37/75 (49%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 + + LY+GNLS+ + + L++ G + + D+ GF FV + ++ + Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 Query: 430 MRYINGTRLDDRIIR 474 + +NG LD R IR Sbjct: 315 INSLNGADLDGRQIR 329 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 40.3 bits (90), Expect = 0.001 Identities = 21/77 (27%), Positives = 41/77 (53%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++T+++G L T++ + ++S+ G+I V + K CGF V++ + AE + Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR----CGF--VQFSEKSCAEEAL 313 Query: 433 RYINGTRLDDRIIRCDW 483 R +NG +L +R W Sbjct: 314 RMLNGVQLGGTTVRLSW 330 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 39.9 bits (89), Expect = 0.002 Identities = 25/96 (26%), Positives = 47/96 (48%) Frame = +1 Query: 193 SYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK 372 S R + + RS ++ + LYI NL + E I EL++ G+++R + D+ + Sbjct: 3 SDRSEDHRSGRSSAG--IETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 60 Query: 373 TPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 + G V Y R DA ++ N +LD + ++ + Sbjct: 61 SK-GTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIE 95 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 39.9 bits (89), Expect = 0.002 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 K S +++G LS T+ + +SR GDI + L++ GF F+ + R + Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63 Query: 427 CMRYINGTRLDDRII---RCDWDAGFIEGRQYG 516 +R ++G DR+I R + G +G +G Sbjct: 64 SIREMHGRDFGDRVISVNRAEPKLGRDDGESHG 96 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 39.9 bits (89), Expect = 0.002 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S ++Y+GNL E +I +++ + G I V + L + PC +CFVE+ DAE+ + Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRI--VDIELKVPPRPPC-YCFVEFEHSRDAEDAI 62 Query: 433 RYINGTRLDDRIIRCD 480 + +G LD +R + Sbjct: 63 KGRDGYNLDGCRLRVE 78 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 39.9 bits (89), Expect = 0.002 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+ N+S +++ E +SR G+I +GLDK P GF Y + E A+ + Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEP 288 Query: 442 NGTRLDDRIIRC 477 + T + ++ C Sbjct: 289 HKT-FEGHVLHC 299 >At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28) nearly identical to SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana] GI:9843655; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 236 Score = 39.5 bits (88), Expect = 0.002 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = +1 Query: 184 EISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDK 363 E Y D + S ++ S L I NL + + + R G ++ + + + Sbjct: 23 ERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82 Query: 364 YKKTPCGFCFVEYYAREDAENCMRYIN 444 Y P GF FV+Y EDA M+ +N Sbjct: 83 YTGEPRGFGFVKYRYAEDAAEAMKRMN 109 >At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 173 Score = 39.5 bits (88), Expect = 0.002 Identities = 18/66 (27%), Positives = 35/66 (53%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 ++ T+YIGN+ ++ +Y++ + G + + + DK P GF F EY E A+ Sbjct: 5 SNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64 Query: 430 MRYING 447 ++ +G Sbjct: 65 VKLFSG 70 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 38.7 bits (86), Expect = 0.004 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 +L + N+ E++ E + R G +R V + D Y P GF FVE+ DA R Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107 Query: 439 IN 444 +N Sbjct: 108 MN 109 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LY+ L+ TT+ ++ E++SR G I + M LD K G+ FV++ +E A ++ + Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKEMALAAIKAL 267 Query: 442 NG 447 NG Sbjct: 268 NG 269 >At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 290 Score = 38.7 bits (86), Expect = 0.004 Identities = 25/84 (29%), Positives = 39/84 (46%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++ LY+G LS T + L+SR G +R V M D + FVE+ DA++ Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADDAR 61 Query: 433 RYINGTRLDDRIIRCDWDAGFIEG 504 Y++G D I ++ G G Sbjct: 62 HYLDGRDFDGSRITVEFSRGAPRG 85 >At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing protein Length = 573 Score = 38.7 bits (86), Expect = 0.004 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++ L++G L ++TT+ +I + S+ G ++ + ++ G+C VE+Y A C Sbjct: 201 NTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACK 260 Query: 433 RYING 447 +NG Sbjct: 261 EGMNG 265 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 38.3 bits (85), Expect = 0.005 Identities = 19/81 (23%), Positives = 43/81 (53%) Frame = +1 Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408 E L + S+L++ S +E ++ +++S G + V + ++ + G+ +V + + Sbjct: 68 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127 Query: 409 REDAENCMRYINGTRLDDRII 471 +EDA++ + +NG D R I Sbjct: 128 KEDAQSAVEAMNGKFFDGRFI 148 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 38.3 bits (85), Expect = 0.005 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 ++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 445 GTRLDDRIIRC-DWDAGFIEGRQYGRGKTGG 534 G LD R+I + + G GRG +GG Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 38.3 bits (85), Expect = 0.005 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 ++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 445 GTRLDDRIIRC-DWDAGFIEGRQYGRGKTGG 534 G LD R+I + + G GRG +GG Sbjct: 69 GKELDGRVITVNEAQSRGSGGGGGGRGGSGG 99 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 38.3 bits (85), Expect = 0.005 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + +Y+ NL+ TT++ + + G I ++ D K+ GF FV + +DA + Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK-GFGFVNFENADDAARAVE 87 Query: 436 YINGTRLDDR 465 +NG + DD+ Sbjct: 88 SLNGHKFDDK 97 >At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing protein low similarity to heterogeneous nuclear ribonucleoprotein G [Mus musculus] GI:5579009; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 152 Score = 38.3 bits (85), Expect = 0.005 Identities = 25/102 (24%), Positives = 51/102 (50%) Frame = +1 Query: 175 SSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMG 354 SS + +YR+ F ++ AS + + NL F T+E+ + +S G+I V + Sbjct: 14 SSSSLPNYRNLRFPKIKASLFNYPLASKIM-VRNLPFSTSEDFLKREFSAFGEIAEVKLI 72 Query: 355 LDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 D+ K G+ F+++ +++DA + ++ + R+I D Sbjct: 73 KDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYID 114 >At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing protein low similarity to SP|Q10572 Sex determination protein fox-1 (Feminizing locus on X protein 1) {Caenorhabditis elegans}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 38.3 bits (85), Expect = 0.005 Identities = 23/60 (38%), Positives = 32/60 (53%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LYI NL F T E Y+L+ R IR+V +G +K K G FV Y DA+ + ++ Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTK---GTAFVVYEDIYDAKKAVDHL 78 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 37.9 bits (84), Expect = 0.007 Identities = 18/72 (25%), Positives = 37/72 (51%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 +IG L++ T++ + + + + G + + LDK+ GF F+ + ++ + + +N Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69 Query: 445 GTRLDDRIIRCD 480 G LD R I D Sbjct: 70 GMDLDGRTITVD 81 >At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1056 Score = 37.9 bits (84), Expect = 0.007 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S+ L++G+L+ TTE + EL+ R GDI R+ + + GF F+ Y E+A Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRHVEEAVAAK 70 Query: 433 RYINGTRLD 459 + G L+ Sbjct: 71 EALQGANLN 79 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 37.9 bits (84), Expect = 0.007 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 TL++G LS +TTE+ + E+ S+ G I+ + + G+ FVEY ++ Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124 Query: 439 INGTRLDDRIIRCDWD 486 + + +D R I D++ Sbjct: 125 AHHSLIDGREIIVDYN 140 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 37.5 bits (83), Expect = 0.009 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 405 T++ ++ TE +YE +SR G +R V + +D+ + G +VE+Y Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 231 Score = 35.1 bits (77), Expect = 0.049 Identities = 23/93 (24%), Positives = 42/93 (45%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 LY+GNL +E+ + +++ G + V + D+ GF FV++ EDA N + Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCK-GFGFVQFARLEDARNALNLN 345 Query: 442 NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 540 + R I+ E + G+ +T G + Sbjct: 346 GQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDL 378 >At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 Length = 360 Score = 37.5 bits (83), Expect = 0.009 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Frame = +1 Query: 178 SIEISSYRDQHFKGSRSEQEKLLKASST--LYIGNLSFYTTEEQIYELYSRCGDIRRVIM 351 S++ + Q G E S T +++G LS TTEE+ + R G V++ Sbjct: 92 SMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVV 151 Query: 352 GLDKYKKTPCGFCFVEYYAREDAENCMR 435 D P GF FV Y + + E M+ Sbjct: 152 MHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179 Score = 35.1 bits (77), Expect = 0.049 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR-- 435 L++G ++ T+EE + + +SR G + ++ +K P GF FV + D +R Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67 Query: 436 -YINGTRLDDR 465 +I G +D R Sbjct: 68 HFILGKPVDVR 78 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 37.1 bits (82), Expect = 0.012 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A LY+GNL F +E Q+ +++ G + V + LD GF F+++ E ++ Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322 Query: 430 MRYING 447 +NG Sbjct: 323 QIALNG 328 Score = 34.7 bits (76), Expect = 0.064 Identities = 13/49 (26%), Positives = 27/49 (55%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 405 T++ + TE +YE +S+ G +R V + +D+ + G ++E+Y Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 217 >At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 284 Score = 36.7 bits (81), Expect = 0.016 Identities = 25/84 (29%), Positives = 38/84 (45%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 ++ LY+G LS T + L+SR G +R V M D + FVE+ DA++ Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADDAR 61 Query: 433 RYINGTRLDDRIIRCDWDAGFIEG 504 Y++G D I + G G Sbjct: 62 YYLDGRDFDGSRITVEASRGAPRG 85 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 36.7 bits (81), Expect = 0.016 Identities = 22/78 (28%), Positives = 38/78 (48%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 K S+ +Y+G + F TE + ++S+ G+I V + DK GF F+ Y + Sbjct: 33 KNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTIL 92 Query: 427 CMRYINGTRLDDRIIRCD 480 + +NG + R I+ D Sbjct: 93 AVDNLNGALVLGRTIKVD 110 >At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3 subunit 9, putative / eIF-3 eta, putative / eIF3b, putative nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana} Length = 714 Score = 36.3 bits (80), Expect = 0.021 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = +1 Query: 283 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 456 F E + ++Y++ G I+ ++M +D K G+CF+E+ ++A+N +G +L Sbjct: 72 FEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 131 Query: 457 D 459 D Sbjct: 132 D 132 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 36.3 bits (80), Expect = 0.021 Identities = 18/69 (26%), Positives = 35/69 (50%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 ++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 445 GTRLDDRII 471 G LD R+I Sbjct: 69 GKELDGRVI 77 >At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch domain-containing protein / RNA recognition motif (RRM)-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF01585: G-patch domain, weak hit to PF00641: Zn-finger in Ran binding protein and others Length = 1105 Score = 35.9 bits (79), Expect = 0.028 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Frame = +1 Query: 154 RSY--DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRC 327 RSY DS S R + ++ ++ S+T+ + LS +TEE +Y++ + Sbjct: 262 RSYREDSYEGDHWNESERRREYEDRHNQDHFSATPSATVVVKGLSMKSTEEDLYQILAEW 321 Query: 328 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI--NGTRLDDR 465 G + V + ++ GF F+++ + A M I +G LD R Sbjct: 322 GPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGR 369 Score = 34.3 bits (75), Expect = 0.085 Identities = 19/66 (28%), Positives = 31/66 (46%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L + L EE + +S+ I+ + + DK+ GF FV +Y+ EDA + Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519 Query: 442 NGTRLD 459 N T L+ Sbjct: 520 NRTALE 525 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 35.9 bits (79), Expect = 0.028 Identities = 24/103 (23%), Positives = 44/103 (42%) Frame = +1 Query: 172 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 351 +S +E+ K ++ S TL+ NLSF + + G++ V Sbjct: 269 SSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRF 328 Query: 352 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 ++ + GF VE+ + E+A+ + + +G L R IR D Sbjct: 329 STNRDDGSFRGFGHVEFASSEEAQKALEF-HGRPLLGREIRLD 370 >At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing protein Length = 710 Score = 35.5 bits (78), Expect = 0.037 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 L++G+L ++TT+ ++ + G ++ V +K G+C VE+Y A C + Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295 Query: 442 NGTRLDDR 465 NG + R Sbjct: 296 NGYPFNGR 303 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 35.5 bits (78), Expect = 0.037 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = +1 Query: 214 KGSRSE-QEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFC 390 +GSR E Q ++ A+ +Y+GNL + ++ L+S G + + D+ GF Sbjct: 192 RGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251 Query: 391 FVEYYAREDAENCMRYINGTRLDDRIIR 474 FV+ + + ++G L+ R I+ Sbjct: 252 FVQMSNENEVNVAIAALDGQNLEGRAIK 279 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 35.5 bits (78), Expect = 0.037 Identities = 18/73 (24%), Positives = 39/73 (53%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +++Y+G L + TEE + ++S G + V + D+ + C + FV + R A++ + Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKC-YGFVTFSNRRSADDAIE 65 Query: 436 YINGTRLDDRIIR 474 ++G + R +R Sbjct: 66 DMDGKSIGGRAVR 78 >At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 455 Score = 35.5 bits (78), Expect = 0.037 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Frame = +1 Query: 229 EQEKLLKASST--LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 E++K+ AS L+IG +S+ T EE++ E + + GD+ ++ D+ GF F+ + Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63 >At5g24440.1 68418.m02880 RNA-binding protein, putative Length = 320 Score = 34.7 bits (76), Expect = 0.064 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = +1 Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408 + E ++K T+Y+ ++ TEEQ+ L+ CG + M D YK F F+E+ Sbjct: 130 QNEDMIKR--TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGD-YKSI-LRFAFIEFTD 185 Query: 409 REDAENCMRYINGTRLDDRIIR 474 E A + +R +GT IR Sbjct: 186 AEGARSALRK-SGTMFGSHPIR 206 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 34.7 bits (76), Expect = 0.064 Identities = 20/82 (24%), Positives = 38/82 (46%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 S + L ++I NL + +YE +S G I + +D ++ G+ FV+ Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK-GYGFVQ 178 Query: 400 YYAREDAENCMRYINGTRLDDR 465 + E A+ + +NG L+D+ Sbjct: 179 FEKEETAQAAIDKLNGMLLNDK 200 >At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 169 Score = 34.3 bits (75), Expect = 0.085 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+G L + T +E + + R G+I V + D+ G+ FV + E A + Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74 Query: 442 NGTRLDDRIIRC 477 N T ++ RI C Sbjct: 75 NPT-IEGRITNC 85 >At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3 subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical to SP|Q9C5Z1 Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis thaliana} Length = 712 Score = 34.3 bits (75), Expect = 0.085 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +1 Query: 283 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 456 F E + ++Y++ G I+ + M +D K G+CF+E+ ++A+N +G +L Sbjct: 71 FEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130 Query: 457 D 459 D Sbjct: 131 D 131 >At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 126 Score = 34.3 bits (75), Expect = 0.085 Identities = 16/73 (21%), Positives = 40/73 (54%) Frame = +1 Query: 229 EQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 408 E L + S+L++ S +E ++ +++S G + V + ++ + G+ +V + + Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108 Query: 409 REDAENCMRYING 447 +EDA++ + +NG Sbjct: 109 KEDAQSAVEAMNG 121 >At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing protein similar to SP|P42731 Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) {Arabidopsis thaliana}; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 423 Score = 34.3 bits (75), Expect = 0.085 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = +1 Query: 169 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI 348 ++SS+ + +Y+D E A L++ NLS T +I +++ C D+ V+ Sbjct: 99 LSSSLTLPTYQD-FLPRQEDETPPADFAEEVLFVANLSPQT---KILDIFGFCQDVGEVV 154 Query: 349 MG--LDKYKKTPCGFCFVEYYAREDAENCMRYING 447 + ++ P G FVE+ + +A+ + NG Sbjct: 155 SVRLIANHEDKPVGCAFVEFLSANEAKKVLENKNG 189 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 34.3 bits (75), Expect = 0.085 Identities = 21/90 (23%), Positives = 38/90 (42%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 ++G L++ T E+ I ++ G++ + +D+ GF FV + + + +N Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106 Query: 445 GTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 G LD R I G G +GG Sbjct: 107 GQELDGRNITAQARGSGTRGGMVGGYGSGG 136 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 33.9 bits (74), Expect = 0.11 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 S ++IG L EE + +L G+I V + D+ G+ FV + ++ A+ + Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175 Query: 436 YINGTRLDDRIIRC 477 ++ + IRC Sbjct: 176 ELHSKEFKGKTIRC 189 Score = 33.1 bits (72), Expect = 0.20 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA----ENC 429 LY+ N+ T+ EQ+ EL+ R G++ +++ K K G FV Y R A ++ Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFG--FVHYAERSSALKAVKDT 351 Query: 430 MRY-INGTRLD 459 RY +NG L+ Sbjct: 352 ERYEVNGQPLE 362 >At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing protein Length = 830 Score = 33.9 bits (74), Expect = 0.11 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Frame = +1 Query: 202 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 381 D HF + + TL I N+ + +++ +L+ G+IR + ++TP Sbjct: 252 DIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-------RETPN 304 Query: 382 G--FCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 F+EYY DAE ++ +N + + + I+ + Sbjct: 305 RRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 339 Score = 28.7 bits (61), Expect = 4.2 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S TL++ N++ + ++ L+ G+IR + GF + YY A M Sbjct: 184 SRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAM 238 Query: 433 RYINGTRLDDRII 471 R + T L R + Sbjct: 239 RALQNTLLRKRTL 251 >At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing protein Length = 843 Score = 33.9 bits (74), Expect = 0.11 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Frame = +1 Query: 202 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 381 D HF + + TL I N+ + +++ +L+ G+IR + ++TP Sbjct: 265 DIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREI-------RETPN 317 Query: 382 G--FCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 F+EYY DAE ++ +N + + + I+ + Sbjct: 318 RRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLE 352 Score = 28.7 bits (61), Expect = 4.2 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S TL++ N++ + ++ L+ G+IR + GF + YY A M Sbjct: 197 SRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSR-----GFVMISYYDIRAAHAAM 251 Query: 433 RYINGTRLDDRII 471 R + T L R + Sbjct: 252 RALQNTLLRKRTL 264 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 33.9 bits (74), Expect = 0.11 Identities = 18/70 (25%), Positives = 36/70 (51%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + +Y+ NLS ++E++ +++ G ++ D K+ GF FV + +DA + Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK-GFGFVNFENSDDAARAVD 282 Query: 436 YINGTRLDDR 465 +NG DD+ Sbjct: 283 ALNGKTFDDK 292 Score = 31.1 bits (67), Expect = 0.79 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 ++I NL + ++E +S G I + +D ++ G+ FV+Y E A+ + + Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK-GYGFVQYDTDEAAQGAIDKL 193 Query: 442 NGTRLDDR 465 NG L+D+ Sbjct: 194 NGMLLNDK 201 >At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 153 Score = 33.5 bits (73), Expect = 0.15 Identities = 20/74 (27%), Positives = 37/74 (50%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S+ L+IG LS+ T + + + ++ GD+ + +D+ GF FV + A + Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 433 RYINGTRLDDRIIR 474 ++G L+ R IR Sbjct: 94 SEMDGKELNGRHIR 107 >At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 158 Score = 33.5 bits (73), Expect = 0.15 Identities = 20/74 (27%), Positives = 37/74 (50%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S+ L+IG LS+ T + + + ++ GD+ + +D+ GF FV + A + Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 433 RYINGTRLDDRIIR 474 ++G L+ R IR Sbjct: 94 SEMDGKELNGRHIR 107 >At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing protein heterogeneous nuclear ribonucleoprotein R, Homo sapiens, PIR:T02673; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 471 Score = 33.5 bits (73), Expect = 0.15 Identities = 25/111 (22%), Positives = 44/111 (39%) Frame = +1 Query: 145 KMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 324 KM ++ + S+ + G +KA LYI NL T+E++ L+ Sbjct: 234 KMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKA---LYIKNLPRDITQERLKALFEH 290 Query: 325 CGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 477 G I +V++ K K + FV Y R ++ +D ++ C Sbjct: 291 HGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDC 341 Score = 27.9 bits (59), Expect = 7.4 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%) Frame = +1 Query: 139 AYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELY 318 A+ RS D +I+ + D F+G R + +A L++GN+ E I + Sbjct: 136 AFVTFRSKDLAAEAIDTLNNTD--FRGKRIKCSTT-QAKHRLFLGNVPRNWMESDIKKAA 192 Query: 319 SRCGDIRRVIMGLDKYKKTPC---GFCFVEYYAREDAENCMRYINGT--RLDDRIIRCDW 483 +R G +++ L K + GF F+EYY AE + ++ +LDD W Sbjct: 193 NRIGPGVQIVE-LPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSW 251 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 33.1 bits (72), Expect = 0.20 Identities = 21/82 (25%), Positives = 39/82 (47%) Frame = +1 Query: 235 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 414 E+ TL++ NLS T I + + ++ RV + + ++ G FVE+ + Sbjct: 482 EEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRL-IVNHRGEHVGCGFVEFASVN 540 Query: 415 DAENCMRYINGTRLDDRIIRCD 480 +A+ ++ +NG L R I D Sbjct: 541 EAQKALQKMNGENLRSREIFLD 562 >At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile: PF00076 RNA recognition motif Length = 636 Score = 33.1 bits (72), Expect = 0.20 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Frame = +1 Query: 133 EQAYKMKRSYDSMNSSIE-ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIY 309 E++ K + +S +E + + + + K ++ + S TL+ GNLS+ I Sbjct: 342 EESKDEKVTPKKKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIE 401 Query: 310 ELYSRCGDIRRVIMGLDKYKKTPC-GFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 480 + G++ V + L + G+ +E+ + E+A+ + +NG L R +R D Sbjct: 402 NFFKEAGEV--VDVRLSSFDDGSFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLD 456 Score = 28.3 bits (60), Expect = 5.6 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIY-EL---YSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 S T+Y+ S E++I EL +S+CG++ RV + D+ GF +++ Sbjct: 478 SRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 33.1 bits (72), Expect = 0.20 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 L++G + + TE Q+ L+ + V + +K + P G CF+ REDA+ Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/75 (20%), Positives = 36/75 (48%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A + L+I N+ ++++ + G + + +DK F F+ Y ++ A+N Sbjct: 337 AGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNA 396 Query: 430 MRYINGTRLDDRIIR 474 + +NG +L + ++ Sbjct: 397 INTMNGCQLSGKKLK 411 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 33.1 bits (72), Expect = 0.20 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 L++G + + TE Q+ L+ + V + +K + P G CF+ REDA+ Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/75 (20%), Positives = 36/75 (48%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A + L+I N+ ++++ + G + + +DK F F+ Y ++ A+N Sbjct: 328 AGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNA 387 Query: 430 MRYINGTRLDDRIIR 474 + +NG +L + ++ Sbjct: 388 INTMNGCQLSGKKLK 402 >At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing protein low similarity to nucleolar phosphoprotein (Nopp52), Tetrahymena thermophila, EMBL:TT51555; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 597 Score = 32.7 bits (71), Expect = 0.26 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 K S +++ + +YIGNL++ TTE I +L+S C I V +G +K G+ Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306 Query: 394 VEY 402 V++ Sbjct: 307 VDF 309 Score = 30.7 bits (66), Expect = 1.0 Identities = 13/59 (22%), Positives = 28/59 (47%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 LY+G + + +TE++I + CG I +V + G F+ + + A+ + + Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221 >At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 32.7 bits (71), Expect = 0.26 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY----YAREDAENC 429 +++G L++ T +E +Y+ + + GDI ++ DK + G+ FV + A E+ Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDS 78 Query: 430 MRYINGTR 453 ING R Sbjct: 79 TPIINGRR 86 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 32.7 bits (71), Expect = 0.26 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 S LY+ NLS E ++ E++ G I + + ++ GF FV + E+++ R Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK-GFGFVCFSNCEESKQAKR 362 Query: 436 YINGTRLDDRII 471 Y+NG +D + I Sbjct: 363 YLNGFLVDGKPI 374 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 32.7 bits (71), Expect = 0.26 Identities = 21/83 (25%), Positives = 40/83 (48%) Frame = +1 Query: 223 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 ++E+ + L++ NL + + I EL+ +CG + V + K K GF FV Sbjct: 84 KTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNR-GFAFVTM 142 Query: 403 YAREDAENCMRYINGTRLDDRII 471 + E+A+ + + ++ RII Sbjct: 143 ASGEEAQAAIDKFDTFQVSGRII 165 Score = 31.9 bits (69), Expect = 0.45 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRC--GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 LY+ NL++ + EL++ + ++ D ++ G+ FV + RE+AEN + Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSS-GYGFVSFATREEAENAIT 254 Query: 436 YINGTRLDDRII 471 +NG + R I Sbjct: 255 KLNGKEIMGRPI 266 >At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 310 Score = 32.7 bits (71), Expect = 0.26 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Frame = +1 Query: 208 HFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVI---MGLDKYKKTP 378 H Q + T+++G+L + E + ++ GD R ++ + +K Sbjct: 85 HQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFAS-GDEREIVSVKVIRNKNNGLS 143 Query: 379 CGFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEGRQ 510 G+ FVE+ + + A+ +R NGT + D+ R +W A F G + Sbjct: 144 EGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTGEK 188 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 32.7 bits (71), Expect = 0.26 Identities = 18/82 (21%), Positives = 38/82 (46%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 S + L ++I NL + ++E +S G I + +D ++ G+ FV+ Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK-GYGFVQ 182 Query: 400 YYAREDAENCMRYINGTRLDDR 465 + E A+ + +NG ++D+ Sbjct: 183 FEKEESAQAAIDKLNGMLMNDK 204 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 32.3 bits (70), Expect = 0.34 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ + Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 +++G L TEE+ + + G I V++ D + P GF F+ + Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 32.3 bits (70), Expect = 0.34 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ + Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 +++G L TEE+ + + G I V++ D + P GF F+ + Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 32.3 bits (70), Expect = 0.34 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 L+IG +S+ T EE++ + +S GD+ ++ D+ GF F+ + Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 +++G L TEE+ + + G I V++ D + P GF F+ + Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158 >At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 411 Score = 32.3 bits (70), Expect = 0.34 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Frame = +1 Query: 193 SYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK 372 S R + SRS + +++G L T+E+ + + G + V + D+ Sbjct: 89 SGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATN 148 Query: 373 TPCGFCFVEYYAREDAENCMRY----INGTRLD-DRIIRCDWDAGFIEGRQYGRGKTGG 534 P GF FV + + + ++ + ++G +++ R + D + G GR G G +GG Sbjct: 149 RPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG-GGRSMGGGGSGG 206 >At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, putative Length = 506 Score = 32.3 bits (70), Expect = 0.34 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + L++ L+ T +E ++ ++SR G + + D + F+E+ +E E Sbjct: 243 NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYF 302 Query: 436 YINGTRLDDRIIRCDW 483 ++ +DDR I D+ Sbjct: 303 KMDNALIDDRRIHVDF 318 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 31.5 bits (68), Expect = 0.60 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + LYIG L ++ + L+S G+I + D+ G+ FV+Y + A ++ Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539 Query: 436 YINGTRLDDRII 471 +NG R + R + Sbjct: 540 AMNGYRFEGRTL 551 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 31.5 bits (68), Expect = 0.60 Identities = 19/72 (26%), Positives = 35/72 (48%) Frame = +1 Query: 256 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 + LYIG L ++ + L+S G+I + D+ G+ FV+Y + A ++ Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539 Query: 436 YINGTRLDDRII 471 +NG R + R + Sbjct: 540 AMNGYRFEGRTL 551 >At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 31.5 bits (68), Expect = 0.60 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 L+I L+ TT E + L+S GD+ I+ LDK G+ FV + Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/54 (24%), Positives = 23/54 (42%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 +Y+ N+ F +++ + GD+ +G DK GF Y E A+ Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222 >At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 31.5 bits (68), Expect = 0.60 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 L+I L+ TT E + L+S GD+ I+ LDK G+ FV + Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/54 (24%), Positives = 23/54 (42%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 423 +Y+ N+ F +++ + GD+ +G DK GF Y E A+ Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222 >At1g32790.1 68414.m04042 RNA-binding protein, putative similar to RNA-binding protein GB:CAB40027 GI:4539439 from [Arabidopsis thaliana] Length = 358 Score = 31.5 bits (68), Expect = 0.60 Identities = 22/86 (25%), Positives = 43/86 (50%) Frame = +1 Query: 199 RDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 378 R + + S +++E +++ T+Y+ +L TEEQ+ L+ CG + V + + Sbjct: 156 RRMNARTSMAQREDVIRR--TVYVSDLDQQVTEEQLAGLFVSCGQV--VDCRICGDPNSV 211 Query: 379 CGFCFVEYYAREDAENCMRYINGTRL 456 F F+E+ E A + ++GT L Sbjct: 212 LRFAFIEFTDEEGAMTALN-LSGTML 236 >At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 31.1 bits (67), Expect = 0.79 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +1 Query: 256 STLYIGNL-SFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S + + NL S + TEE++ +++SR G+I V + K+ F ++ + ++A++ + Sbjct: 2 SWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSR-QFAYIGFRTEQEAQDAI 60 Query: 433 RYINGTRLD 459 Y+N +D Sbjct: 61 TYVNKCFID 69 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 30.7 bits (66), Expect = 1.0 Identities = 17/67 (25%), Positives = 36/67 (53%) Frame = +1 Query: 223 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 ++E+E+ +K L++G + + +E Q+ L+ + V + DK + G CF+ Sbjct: 11 KNEEEESVK----LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66 Query: 403 YAREDAE 423 +RE+A+ Sbjct: 67 PSREEAD 73 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 30.7 bits (66), Expect = 1.0 Identities = 17/67 (25%), Positives = 36/67 (53%) Frame = +1 Query: 223 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 ++E+E+ +K L++G + + +E Q+ L+ + V + DK + G CF+ Sbjct: 11 KNEEEESVK----LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66 Query: 403 YAREDAE 423 +RE+A+ Sbjct: 67 PSREEAD 73 >At5g54020.1 68418.m06719 expressed protein Length = 556 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -1 Query: 460 HPASCHLYTSYNFRHLPAHSILQNKIHKVFSC 365 HP SC + SY FR + + L+N I+ + C Sbjct: 16 HPLSCGTFESYTFRSILSIPKLRNGIYNCYHC 47 >At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 357 Score = 30.3 bits (65), Expect = 1.4 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F F++Y A+EDA + N ++L D++I ++ Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164 >At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 356 Score = 30.3 bits (65), Expect = 1.4 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F F++Y A+EDA + N ++L D++I ++ Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164 >At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type Length = 613 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/77 (22%), Positives = 36/77 (46%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 429 A +++ + TT+E + + G+I + +DK G+ FV + R+ A Sbjct: 406 AQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465 Query: 430 MRYINGTRLDDRIIRCD 480 ++ R+ +RI+ C+ Sbjct: 466 LKRPE-KRMYNRIVVCN 481 >At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 309 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F F++Y A+EDA + N ++L D++I ++ Sbjct: 92 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 124 >At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 350 Score = 29.9 bits (64), Expect = 1.8 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +1 Query: 385 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 483 F F++Y A+EDA + N ++L D++I ++ Sbjct: 133 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 29.9 bits (64), Expect = 1.8 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +++G L++ T +++ + + G+I ++ DK G+ FV + + A + Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78 Query: 442 NGTRLDDRIIRCDWDAGFIEGR---QYGRGKTG 531 N +D R C+ A F R GRG+TG Sbjct: 79 NPV-IDGRKANCN-IASFGRPRPSPPRGRGQTG 109 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 29.9 bits (64), Expect = 1.8 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +++G L++ T +++ + + G+I ++ DK G+ FV + + A + Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78 Query: 442 NGTRLDDRIIRCDWDAGFIEGR---QYGRGKTG 531 N +D R C+ A F R GRG+TG Sbjct: 79 NPV-IDGRKANCN-IASFGRPRPSPPRGRGQTG 109 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 29.9 bits (64), Expect = 1.8 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Frame = +1 Query: 220 SRSEQEKLLKASST-----LYIGNLSFYTTEEQIYELYSRCGDIR--RVIMGLDKYKKTP 378 ++ E EK+++ T LY+ NL ++ EL+S G I +V++ + K Sbjct: 206 AKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISK-- 263 Query: 379 CGFCFVEYYAREDAENCMRYINGTRLDDRII 471 G FVE+ E+A M +NG + ++ I Sbjct: 264 -GVGFVEFSTSEEASKAMLKMNGKMVGNKPI 293 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 29.9 bits (64), Expect = 1.8 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 T+Y+GNL + ++ +L+ + G I + + K P G+ FVE+ DA++ + Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYG 64 Query: 439 INGTRLDDRIIRCD 480 +G D +R + Sbjct: 65 RDGYDFDGCRLRVE 78 >At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 481 Score = 29.9 bits (64), Expect = 1.8 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 438 TLY+G L+ E+ I + + G+I + + DK C FV Y +RE AE + Sbjct: 229 TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADK----AC--AFVTYTSREGAEKAAQE 282 Query: 439 I-NGTRLDDRIIRCDWDAGFIEGRQYGRGKTGG 534 + N ++ + ++ W G + Q G + GG Sbjct: 283 LSNRLVINGQRLKLTW--GRPKPDQDGANQQGG 313 >At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 100 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/72 (26%), Positives = 30/72 (41%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +Y+ L + T E + + R G+I + D + GF FV + E A Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70 Query: 442 NGTRLDDRIIRC 477 N T +D R + C Sbjct: 71 NHT-IDGRTVNC 81 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +1 Query: 250 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 402 ++ +++G L+ TT + + + + G+I ++ D+ P GF FV Y Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90 >At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 180 Score = 29.5 bits (63), Expect = 2.4 Identities = 20/80 (25%), Positives = 32/80 (40%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 S E + LYI NL T+E++ L+ G I +V++ K K + FV Sbjct: 22 SGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVH 81 Query: 400 YYAREDAENCMRYINGTRLD 459 Y R ++ +D Sbjct: 82 YAERTSVMRALKNTERYEID 101 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/58 (24%), Positives = 29/58 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +++ L + TT E + ++ G+I + +DK GF FV + R+ A+ ++ Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 29.5 bits (63), Expect = 2.4 Identities = 14/58 (24%), Positives = 29/58 (50%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 435 +++ L + TT E + ++ G+I + +DK GF FV + R+ A+ ++ Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 >At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S TL++ N++ + ++ L+ + GDI R + K++ GF + YY A M Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDI-RTLYTTCKHR----GFVMISYYDIRSARMAM 221 Query: 433 RYINGTRLDDR 465 R + L R Sbjct: 222 RSLQNKPLRRR 232 >At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S TL++ N++ + ++ L+ + GDI R + K++ GF + YY A M Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDI-RTLYTTCKHR----GFVMISYYDIRSARMAM 221 Query: 433 RYINGTRLDDR 465 R + L R Sbjct: 222 RSLQNKPLRRR 232 >At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 830 Score = 29.1 bits (62), Expect = 3.2 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +1 Query: 280 SFYTTEEQIYELYSRCGDIRRV--IMGLDKYKKTPCGFCFVEYYA 408 S + E + ++Y++CGDI + + G Y + P + YA Sbjct: 580 SLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYA 624 >At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328 Length = 426 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 172 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQI 306 N+S+ RD+ +GS K L+ + L G L FY TE +I Sbjct: 342 NASLTREEIRDRCAEGSWDVFNKYLQQTQPLNNGKLGFYYTENEI 386 >At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328 Length = 558 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 172 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQI 306 N+S+ RD+ +GS K L+ + L G L FY TE +I Sbjct: 342 NASLTREEIRDRCAEGSWDVFNKYLQQTQPLNNGKLGFYYTENEI 386 >At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing protein similar to Tat-SF1 - Homo sapiens, GI:1667611; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 519 Score = 28.7 bits (61), Expect = 4.2 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 244 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK 369 LK + +Y+ L T E++ E++S+CG I+ G + K Sbjct: 272 LKVNPHIYVNGLPDDVTIEEVAEVFSKCGIIKEDDTGKPRIK 313 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = +1 Query: 265 YIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 444 ++G L++ T +E + +S+ GD+ + D+ GF FV + + + + +N Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 445 GT 450 G+ Sbjct: 69 GS 70 >At3g18890.1 68416.m02399 expressed protein similar to UV-B and ozone similarly regulated protein 1 UOS1 [Pisum sativum] GI:20339364 Length = 641 Score = 28.7 bits (61), Expect = 4.2 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -2 Query: 582 TATPTVIVSSIFISNLASCFATTVLST-FNESSIPVTANYSVIQPRAIY 439 T T T + +S+ +++A+ T ++T E++ P T+ + P AIY Sbjct: 491 TVTETAVATSVTETSVATSVPETAVATSVTETAAPATSKMRPLSPYAIY 539 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 28.7 bits (61), Expect = 4.2 Identities = 16/73 (21%), Positives = 34/73 (46%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +++G L++ T + + + + G+I ++ DK G+ FV + E A + + Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83 Query: 442 NGTRLDDRIIRCD 480 N +D R C+ Sbjct: 84 NPV-IDGRRANCN 95 >At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 501 Score = 28.3 bits (60), Expect = 5.6 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 259 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL----DKYKKTPCGFCFVEYYAREDA 420 T+++GNL F +E++Y+L++ ++ I + D + G +V + RE A Sbjct: 284 TVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341 >At4g30870.1 68417.m04383 repair endonuclease family protein contains Pfam PF02732 : ERCC4 domain; similar to repair endonuclease (TIGR:At5g41150) [Arabidopsis thaliana] Length = 661 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 151 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLL 246 +++ D M SSI + YRDQ + RS +KL+ Sbjct: 362 RKNVDDMRSSIRDNRYRDQKLRLQRSGFKKLI 393 >At3g14450.1 68416.m01831 RNA-binding protein, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies) Length = 327 Score = 28.3 bits (60), Expect = 5.6 Identities = 20/79 (25%), Positives = 40/79 (50%) Frame = +1 Query: 220 SRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 399 S++++E ++ T+Y+ ++ TEE + L+S CG + + D + + F FVE Sbjct: 131 SKAQREDSIRR--TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPH--SVLRFAFVE 186 Query: 400 YYAREDAENCMRYINGTRL 456 + + A + + GT L Sbjct: 187 FADDQGAHEALS-LGGTML 204 >At1g62400.1 68414.m07040 protein kinase, putative similar to protein kinase gi|170047|gb|AAA34002; contains protein kinase domain, Pfam:PF00069 Length = 345 Score = 28.3 bits (60), Expect = 5.6 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +1 Query: 151 KRSYDSMNS-SIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIY 309 K+ +DSM S S+ + S + ++ S+ E+E+ S L+IGN +IY Sbjct: 3 KKRFDSMESWSMILESENVETWEASKGEREEWTADLSQLFIGNKFASGAHSRIY 56 >At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122 Length = 915 Score = 27.9 bits (59), Expect = 7.4 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 432 S TL +GN+S + ++ L+ + GDI+ + GF V Y A+N Sbjct: 216 SRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNR-----GFIMVSYCDIRAAQNAA 270 Query: 433 R-----YINGTRLDDR 465 R + GT+LD R Sbjct: 271 RALQNKLLRGTKLDIR 286 >At5g57670.1 68418.m07207 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 416 Score = 27.9 bits (59), Expect = 7.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 579 RLWKNNSTENKPKYPRTLIMC 641 R W+ + T+NKPK P+ LI C Sbjct: 72 RKWRGSETKNKPK-PQPLIQC 91 >At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 1280 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -2 Query: 600 CYYFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVT 475 C++ + P + S+ FI S F T V++ FN+S I T Sbjct: 867 CFHVLRKSDPPFVPSTTFIKQGLSSFITFVVTHFNDSRISNT 908 >At1g53650.1 68414.m06105 RNA-binding protein, putative similar to RNA-binding protein GB:AAA86641 GI:1174153 from [Arabidopsis thaliana] Length = 314 Score = 27.9 bits (59), Expect = 7.4 Identities = 19/81 (23%), Positives = 41/81 (50%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 + S++++E ++ T+Y+ ++ TEE + L+S CG + V + + F F Sbjct: 116 RASKAQREDSIRR--TVYVSDIDQSVTEEGLAGLFSSCGQV--VDCRICGDPNSVLRFAF 171 Query: 394 VEYYAREDAENCMRYINGTRL 456 VE+ + A + + + GT + Sbjct: 172 VEFSDDQGARSALS-LGGTMI 191 >At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing protein KIAA0332 - Homo sapiens, EMBL:AB002330 Length = 946 Score = 27.5 bits (58), Expect = 9.8 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Frame = +1 Query: 253 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IM--GLDKYKKTPCGFCFVEYYAREDAE 423 ++ LY+GNLS E + + R G I V IM D+ K+ FV + R D + Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237 Query: 424 NCMRYINGTRLDDRIIRCDW 483 + G + + ++ W Sbjct: 238 AAKDEMQGIIVYEYELKIGW 257 >At3g13700.1 68416.m01731 RNA-binding protein, putative similar to mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam profile:PF00076 rrm:RNA recognition motif Length = 296 Score = 27.5 bits (58), Expect = 9.8 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +1 Query: 247 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 426 +A STL+I NL TE+++ +L SR I+ + P F ++ E A + Sbjct: 220 RACSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATD 275 Query: 427 CMRYINGTRL 456 M ++ G L Sbjct: 276 AMNHLQGNLL 285 >At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 358 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/67 (22%), Positives = 33/67 (49%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 KG+ Q K +K +++G + TE+++ + +++ G++ + D GF F Sbjct: 96 KGAGGNQSKDIKTKK-IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154 Query: 394 VEYYARE 414 V + + E Sbjct: 155 VIFDSEE 161 >At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 231 Score = 27.5 bits (58), Expect = 9.8 Identities = 15/67 (22%), Positives = 33/67 (49%) Frame = +1 Query: 214 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 393 KG+ Q K +K +++G + TE+++ + +++ G++ + D GF F Sbjct: 96 KGAGGNQSKDIKTKK-IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154 Query: 394 VEYYARE 414 V + + E Sbjct: 155 VIFDSEE 161 >At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 583 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 304 IYELYSRCGDIRRVIMGLDKYKKT 375 + LYSRCGD+ + DK K+T Sbjct: 249 LINLYSRCGDVGKAREVFDKMKET 272 >At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 382 Score = 27.5 bits (58), Expect = 9.8 Identities = 17/72 (23%), Positives = 33/72 (45%) Frame = +1 Query: 262 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 441 +++ L + TT E + + G+I + +DK GF FV + R+ A ++ Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224 Query: 442 NGTRLDDRIIRC 477 R+ +R + C Sbjct: 225 E-KRMYNRTVSC 235 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,402,174 Number of Sequences: 28952 Number of extensions: 285252 Number of successful extensions: 944 Number of sequences better than 10.0: 172 Number of HSP's better than 10.0 without gapping: 870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 925 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1614253080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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