Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F02
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    77   3e-15
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    75   1e-14
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    46   6e-06
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.4  

>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 38/75 (50%), Positives = 48/75 (64%)
 Frame = +2

Query: 509 KKALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEV 688
           K+ L G V ++D   G+GP AK  K V + Y GRL  N K+FD  + G  F F LG +EV
Sbjct: 253 KQVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLT-NGKVFDKNITGKPFTFNLGLEEV 311

Query: 689 IXGWDVGVSGMKVGG 733
           I GWDVG+ GM+VGG
Sbjct: 312 IKGWDVGIVGMQVGG 326


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 38/74 (51%), Positives = 48/74 (64%)
 Frame = +2

Query: 512 KALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEVI 691
           + L GGV + D+K G+G  A  GK V + Y G+L +N K+FD   KG  F F LG  EVI
Sbjct: 253 RTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKL-ENGKVFDKNTKGKPFAFILGRGEVI 311

Query: 692 XGWDVGVSGMKVGG 733
            GWDVGV+GM+ GG
Sbjct: 312 RGWDVGVAGMQEGG 325


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +2

Query: 527 GVQIEDLKLGNGP-VAKPGKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVIXGW 700
           GV+ + +  GNG    KPG  + ++Y G L  N K FD+ + +G  F   +G  ++I GW
Sbjct: 2   GVEKQVISSGNGQDFPKPGDRITMHYTGTLT-NGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 701 DVGVSGMKVG 730
           D GV  M +G
Sbjct: 61  DEGVPKMSLG 70


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 688 DLFCAKTELESRSLEAVVKHFVVLFKATFIVDHDNFAWLSNRTITKFQVLNLY 530
           D+  A+  L S SLE  V+  +    + + +D+ NF  +S + + K + + LY
Sbjct: 105 DVHFARVYLSS-SLELSVRLLISRIPSYYFIDNQNFYRVSPQVLPKNKAIALY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,655
Number of Sequences: 5004
Number of extensions: 25952
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)