Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F02
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       41   0.001
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)                  28   9.0  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 578 GKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVIXGWDVGVSGMKVG 730
           G  + ++Y GRL   NK FD+ L +G  F F LG   VI GW+ G+  M +G
Sbjct: 45  GDTLSMHYTGRLANGNK-FDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIG 95


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +2

Query: 572 KPGKVVMVYYEGRLKQNNKMFDNCL---KG-PGFKFRLGAKEVIXGWDVGVSGMKVG 730
           K G  V+V+Y G + Q+  +FD      KG   F+F +G   VI G++ GV+GM VG
Sbjct: 116 KVGDHVVVHYTGWM-QDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVTGMCVG 171


>SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 503 KEKKALSGGVQIEDLKLGNGPVAKPG---KVVMVYYEGRLKQNNKMFDNCLKGPGFKFRL 673
           KE++ +   +Q+  ++L  G + K G    + ++  + R++++  +   CL   G +  +
Sbjct: 179 KERRGVQS-IQVSAVRLHRGFLTKDGWGNDIALIQLKKRVRRSRLVRPICLPRVGQEVEI 237

Query: 674 GAKEVIXGW 700
           G K  + GW
Sbjct: 238 GTKCYMTGW 246


>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 494 IEKKEKKALSGGVQIEDLKLGNGPVAKPGKV 586
           IEK+ K  LSGG  +  L+  +G   KPG+V
Sbjct: 59  IEKEMKALLSGGATVPWLRGRDGRDGKPGRV 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,882
Number of Sequences: 59808
Number of extensions: 191603
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)