Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_F02
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.18 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 167 HFHLCQYLHHPTISEVDLPXXXXXHPSS 84
           H  L  Y HHP   EVDLP      P S
Sbjct: 275 HTGLGHYGHHPDPGEVDLPPETQPTPPS 302


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 706 NIPAXNDLFCAKTELESRSLEAVVKHFV 623
           ++ + ND++C K E    +   + KH V
Sbjct: 154 DLKSHNDIYCEKYEKNGETYLRIKKHAV 181


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 282  KPLWIQVRKNPKLILPSLP 338
            +PL++ VR  P   +PS P
Sbjct: 946  EPLYVFVRSAPNFYMPSEP 964


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,994
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)