Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F01
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 1.3
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 2.2
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 26 5.2
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 5.2
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 26 6.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.9
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 6.9
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 6.9
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.1
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 9.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.1
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 9.1
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 184 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNTQHGSS 65
+L+ F GL VNL I A HN DHG + H++ S
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHSHSNHS 491
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 327 RILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 464
R++ + +K+++ P T DKT +P D + N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 108 QLCLRRRNPASMFSKLTSSPKKHRS 182
QL LRR+ A+ SKL+SS H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 137 IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 241
ID+ +D P E AQKY+ + PFT P A LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 402 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTE 530
P + LP+ S I+ D ETS A + + + +S VT + E
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVTTKPE 315
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 661 LLCSSGSSFLPCFFMSYTSSPHIWSLFYWFQLDL 560
+L +G+ F+P + +T H+ +++ W L L
Sbjct: 190 ILLGAGTVFVPLMWCYFTHDLHLVTMYIWITLRL 223
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 362 HRILLQRSPQYSRFPFRSSSSVQEWGLL 279
HR+++Q +P Y R V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 379 TRRSRCICLRIPDSRICEGRKSRQIRR 459
TRRS L+IPDS IC R+ R
Sbjct: 461 TRRSSFSTLKIPDSDICFTRRRSDSNR 487
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +2
Query: 287 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 466
PT+ + K + Y + Y+ ++ +D + Y + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392
Query: 467 GSYIYKDGKNDLIKVRYWSD 526
+ I G DL K+ + D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 283 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 402
R + WT + KG Y L+ + + P TRR R C
Sbjct: 59 RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 689 LPKDYYXQTYKALPSDYYQPQAS 757
+PK Y + Y +PS Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 320 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 433
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 355 IRC-VPIPRTRRSRCIC-LRIPDSRICE 432
IRC +PIPRTR SR + DSR E
Sbjct: 34 IRCDIPIPRTRTSRPFAFVEYEDSRDAE 61
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 766 LLFGCLWLVIITWKGFVGLXVI 701
LLFGCL +V + F+GL +
Sbjct: 49 LLFGCLTIVFSAFASFLGLYFV 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,479
Number of Sequences: 5004
Number of extensions: 64381
Number of successful extensions: 215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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