Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_F01
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 36 0.024
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 33 0.23
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 30 2.1
AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math... 30 2.1
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 29 4.8
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 4.8
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 4.8
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 4.8
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 36.3 bits (80), Expect = 0.024
Identities = 23/85 (27%), Positives = 32/85 (37%)
Frame = +3
Query: 300 TTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIS 479
TT T + TT T P TT PT T + + + P T+P +
Sbjct: 225 TTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTT 284
Query: 480 TRTAKMISSRYVTGQTETVSTRKTT 554
T T +++ T T T KTT
Sbjct: 285 TPTTTTTTAKTTKSTTTTTKTTKTT 309
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 33.1 bits (72), Expect = 0.23
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 279 KQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 458
K+ LLD + +KS ++ TT KK + K + +P+ AS P+
Sbjct: 11 KKTSLLDPS---PKKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPK 64
Query: 459 TSPARISTRTAKMISSRYVTGQTETVST---RKTTYLRS 566
TSPA+ +T T +++ + T +ST RK T +S
Sbjct: 65 TSPAKTTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKS 103
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 281 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 451
+G T+ N + N +Y+++ D Q + G + Y + ++ +PE++K +EN +
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361
Query: 452 SGDVTGSYIYKDGKNDLIKVRYWSDRD 532
K NDL+KV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378
>AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math
domain containingprotein 5 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 290 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 430
TL H +KN ++E+ ED+ ++ S H ++ LG Y Y Y++ ESA
Sbjct: 9 TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +2
Query: 221 GRTAVLPLIKYNDQRFRTAEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 400
GR ++ IK D RF+ G GH G ++ Y D+ HG + G
Sbjct: 88 GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147
Query: 401 AYGYQT 418
Y T
Sbjct: 148 VEQYHT 153
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 355 IRCVPIPRTRRSRCICLRIPDSRI 426
+RC+ R RRSR +C+ + + R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 671 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 564
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 671 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 564
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 671 EDRAVVQQRQQLLAMLFHELYEQPSHLEPLLLVSAR 564
E R VV+ Q L HE +++P H E LL +A+
Sbjct: 857 EARKVVRHSQLLTEQFQHEAHQRPEHRERLLDAAAK 892
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,797
Number of Sequences: 27780
Number of extensions: 372653
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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