Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E22
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.53 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 647 LNLKNDHLRKRFDALKYDVKKIEEVVY 727
           L  +N HL+   D LK +++K++++VY
Sbjct: 170 LERENCHLKFVTDTLKKELEKLQKIVY 196


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 296 PSQKVDELCHMPEKCRLHCSVLLGALWSLPEI 201
           PSQ + E    PE+ +     ++G  +SLP +
Sbjct: 453 PSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMV 484


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 317 LKDAVPPTDYFKYQDHWRFMTQRYCY 394
           +KD+VP T  + +   W     + CY
Sbjct: 49  VKDSVPMTCRYTFLLEWYHTLSKACY 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,805
Number of Sequences: 336
Number of extensions: 3898
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)