BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_E22 (803 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 110 3e-25 SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 41 2e-04 SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 31 0.14 SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.44 SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 29 1.0 SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 27 2.4 SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 27 3.1 SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 4.1 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.2 SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 9.5 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.5 >SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr 1|||Manual Length = 236 Score = 110 bits (264), Expect = 3e-25 Identities = 63/157 (40%), Positives = 89/157 (56%), Gaps = 8/157 (5%) Frame = +2 Query: 305 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAEI 460 G A L P Y+KY W Q+ YL L W L+K + L S + +I Sbjct: 83 GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139 Query: 461 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 640 L V + FHL IE YL +L++CSEL+R +VNSV G+Y P + ++++ F Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHIPFEALNTIQKVHSSF 199 Query: 641 RLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLL 751 ++L+LKND LR+ FD LKYD+K+ E+VVYDL I L+ Sbjct: 200 QVLSLKNDSLRRHFDGLKYDLKRSEDVVYDLRIHKLV 236 >SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual Length = 231 Score = 40.7 bits (91), Expect = 2e-04 Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 5/213 (2%) Frame = +2 Query: 119 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKA 298 F F+ L ++Q+ RE I + +E+ S+ +L ++ P +FEK Sbjct: 5 FLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKK 64 Query: 299 -HDGYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVSP 475 H LK + + K+ Q Y + WL+ G L S + + + ++ Sbjct: 65 IHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKDSSFRISINF 124 Query: 476 VELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF----R 643 + DY++G+ M E+ R V + ++ ++ + KF+ L+ Sbjct: 125 I-----------DYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEH 173 Query: 644 LLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIR 742 L + L+++ ++ + K+E + Y +R Sbjct: 174 LPSKVKSELQQKLSVMENSISKVEGICYSKILR 206 >SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosaccharomyces pombe|chr 2|||Manual Length = 2358 Score = 31.5 bits (68), Expect = 0.14 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Frame = +2 Query: 527 LLTMCSELSRLAVNSVTRGDYERPLRISKFV-MELNAGFRLLNLKNDHLRKRFDALKYDV 703 L T+ S R +N V R E L + + M LN F L +ND AL Y Sbjct: 1766 LETISSVHHRSPINQVVRNLNESQLSLDSVISMNLNKEFALTKTENDFTDDNGRALNYFS 1825 Query: 704 KKIEEV 721 +K+EE+ Sbjct: 1826 QKLEEL 1831 >SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 244 Score = 29.9 bits (64), Expect = 0.44 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Frame = +2 Query: 323 DAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILAS-HETMAEILGVSPVELKEGFH 499 DA+ F H F+T Y Y I T+ + KG + TM + L + + Sbjct: 137 DALLTVSLFGLFHHLMFLTTNYSYTINSTLDISKGFFINVLSTMVQALVTVTIAFTKFVT 196 Query: 500 LDIEDYLIGLLTMCSELSR 556 +D Y+ L + LSR Sbjct: 197 IDFPIYVFSSLFLYHPLSR 215 >SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 331 Score = 28.7 bits (61), Expect = 1.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -3 Query: 282 RRALPHAGEMPASL*CITWSTVVASRDIWSTSLHI 178 RR +P E PA C++W+ V + +WS+ HI Sbjct: 128 RRCIPD--EHPAKRLCLSWAIVGMNAWVWSSVFHI 160 >SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 422 Score = 27.5 bits (58), Expect = 2.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +2 Query: 134 KNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 247 ++LD+ E+ + T CK+VD+I ++ ++ I E Sbjct: 280 RDLDKHDEVELLLETYCKQVDEIVQQTDNLVGNIRSTE 317 >SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 362 Score = 27.1 bits (57), Expect = 3.1 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = +2 Query: 77 KHVKMCXNELINKIFSDFQKNLDQEQEL----RETIRTICKEVDQISREATTVLQVIHYN 244 K+ +C NE NK++ K+++ ++++ + I+ IC ++ Q L+ Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ-PNAFQIFLKENSKR 319 Query: 245 EAGISPACGKARLLFEKAHDGYARLKDA 328 + P L+ +K D Y R KDA Sbjct: 320 LRKLHPHITHKELM-KKLSDEYHRTKDA 346 >SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 26.6 bits (56), Expect = 4.1 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = -3 Query: 654 KFNNLKPAFSSITNLEILRGRS*SPRVTEFTARRDNSEHIVNSPIR*SSMSK-WKPSFNS 478 +F N+ AF ++T +LR S T S +VNS S+S+ S Sbjct: 323 RFTNVLSAFDALTRTYLLRQNSKVVHATSQKQEMQTSRRVVNSCYMPESLSRNLSSSLQQ 382 Query: 477 TG 472 TG Sbjct: 383 TG 384 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.8 bits (54), Expect = 7.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 141 STKNKNYARLFGLYVKRLTKYLGK 212 STK A +G YV++LTK + K Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722 >SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 652 Score = 25.4 bits (53), Expect = 9.5 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -3 Query: 579 RVTEFTARRDNSEHIVNSPIR*SSMSKWKPSFNSTGLTPNISAMVSCEARIPFSSHI 409 R + T R NSE+ +N+P S + F G T +V E P SS + Sbjct: 192 RAKDETMRNQNSEYALNNPNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKL 248 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 25.4 bits (53), Expect = 9.5 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 440 HETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSR 556 H T+AEI + KE + D D+ G +C+ L R Sbjct: 4051 HATLAEIYCFTCSSWKEPCYFDDSDFYFGTKILCNILYR 4089 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,219,005 Number of Sequences: 5004 Number of extensions: 64605 Number of successful extensions: 188 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 187 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 390427050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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