Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E22
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 159 3e-39
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 46 3e-05
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 29 3.3
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 28 7.6
03_05_0071 - 20491521-20492813 28 7.6
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 28 7.6
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477... 28 10.0
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 159 bits (385), Expect = 3e-39
Identities = 88/233 (37%), Positives = 128/233 (54%), Gaps = 21/233 (9%)
Frame = +2
Query: 119 FSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLLFEKA 298
F F+ LD+ LR+ IR + EV+ SR A+ L ++H ++ GKA+ E
Sbjct: 81 FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAKAQVEVI 139
Query: 299 HDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEILGVS 472
Y+RL + + P Y++Y WR TQ ++A WLE G L H E LG
Sbjct: 140 KGLYSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCM 199
Query: 473 P------------------VELKEG-FHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYER 595
P +++ G F LD+EDYL GL M ++ R VN VT GDY+
Sbjct: 200 PGPCDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDC 259
Query: 596 PLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLP 754
P ++ F+ +L+A FR+LNL+ND LRK+FD +KYD++++EEV YD+ IRGL+P
Sbjct: 260 PRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYDVKIRGLVP 312
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 488 EGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGFRL---LNLK 658
E +++ DY++G+ + EL RLA+ ++ G+ E I FV ++ L L
Sbjct: 126 EPLQINVLDYVLGVADLSGELMRLAIGRISDGEVEYAKNICAFVRDIYRELTLVVPLMDD 185
Query: 659 NDHLRKRFDALKYDVKKIEEVVYDLSIRG 745
N ++K+ + + V KIE + + +RG
Sbjct: 186 NSEMKKKMETMLQSVVKIENACFSVHVRG 214
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 236 HYNEAGISPACGKARLLFEKAHDGYARLKDAVPPTDY 346
HYN + +P+ G ++ L DGYA L++ PP ++
Sbjct: 208 HYNVSSSAPSAGDSKPL--PGDDGYAWLEECEPPDNF 242
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 605 ISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLPKG 760
+ K +EL AG R + + LRK+ A K+ ++ V+ D RGLL G
Sbjct: 109 VEKAAVELLAG-RAFTVSD--LRKKLRAKKFPDNAVDSVIADFKSRGLLNDG 157
>03_05_0071 - 20491521-20492813
Length = 430
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 437 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 574
SH+ ++ G +P + EGF + D + LL SR+A V
Sbjct: 49 SHQRQMQVFGQAPDRVVEGFSEEFLDAFLTLLRRAHRHSRIAATVV 94
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 47 NKIKEPRLLIKHVKMCXNELINKIFSDFQKNLDQEQELR--ETIR-----TICKEVDQIS 205
+++++ RL +K +K +EL+ ++F Q ++E+E + ET+ E+ +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159
Query: 206 REATTVLQVIH 238
+E T + +H
Sbjct: 160 QETTVSITEVH 170
>11_06_0051 -
19645726-19646007,19646045-19646513,19647749-19647771,
19647978-19648328
Length = 374
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 65 RLLIKHVKMCXNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVL 226
+L + K NE IN+I F + +E+E R I +E+ + TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,302
Number of Sequences: 37544
Number of extensions: 426279
Number of successful extensions: 1216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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