Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E22
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37020.1 68415.m04540 translin family protein similar to SP|Q... 159 2e-39
At2g03780.1 68415.m00338 translin family protein similar to SP|Q... 65 6e-11
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 30 1.6
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 30 1.6
At4g27460.1 68417.m03946 CBS domain-containing protein 30 2.1
At5g51795.1 68418.m06422 Kin17 DNA-binding protein-related 29 3.6
At5g52280.1 68418.m06488 protein transport protein-related low s... 28 6.3
At5g41760.1 68418.m05084 nucleotide-sugar transporter family pro... 28 6.3
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 28 6.3
At2g43470.1 68415.m05402 expressed protein 28 6.3
>At2g37020.1 68415.m04540 translin family protein similar to
SP|Q62348 Translin {Mus musculus}; contains Pfam profile
PF01997: Translin family
Length = 238
Score = 159 bits (387), Expect = 2e-39
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 2/221 (0%)
Frame = +2
Query: 107 INKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNEAGISPACGKARLL 286
+ K F F+ L++ LRE IR + E++ +R L ++H + I KA+
Sbjct: 12 LEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQANLLLVHQSRP-IPEVIEKAKEK 70
Query: 287 FEKAHDGYARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAEI 460
Y RL + + P Y++Y WR TQ +A WLE G L H E
Sbjct: 71 IVDLKQYYGRLAEILEECPGQYYRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEK 130
Query: 461 LGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPLRISKFVMELNAGF 640
LG++ +E F L+ EDYL G+ M ++L R VN VT GDY+ P ++ F+ +L+A F
Sbjct: 131 LGLNSLE----FGLETEDYLTGICFMSNDLPRYVVNRVTAGDYDCPRKVMNFLTDLHAAF 186
Query: 641 RLLNLKNDHLRKRFDALKYDVKKIEEVVYDLSIRGLLPKGD 763
R+LNL+ND LRK+FD++KYD++++EEV YD+ IRGL+ GD
Sbjct: 187 RMLNLRNDFLRKKFDSMKYDLRRVEEVYYDVKIRGLISGGD 227
>At2g03780.1 68415.m00338 translin family protein similar to
SP|Q99598 Translin-associated protein X
(Translin-associated factor X) {Homo sapiens}; contains
Pfam profile PF01997: Translin family
Length = 287
Score = 64.9 bits (151), Expect = 6e-11
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 6/232 (2%)
Frame = +2
Query: 71 LIKHVKMCXNELINK-IFSDFQKNLDQEQELRETIRTICKEVDQISREATTVLQVIHYNE 247
L+K + E K FS + L+ E RE + + +++ S++ + QV ++
Sbjct: 37 LVKKARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSRDITMNSKKV--IFQVHRLSK 94
Query: 248 AGISPACGKARLLFEKAHDG-YARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIWLEK 424
KA E D +ARL + TD++K + + Q Y +
Sbjct: 95 DNKEEVLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYSPGVQEYVEAATFYKFCLS 154
Query: 425 GILAS-HETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSVTRGDYERPL 601
G L + E ++ +S L E ++I DY++GL + EL R+A+ ++ G+ E
Sbjct: 155 GTLCTLDEINTTLVPLSDPSL-EPLQINILDYILGLADLTGELMRMAIGRISDGEIEFAQ 213
Query: 602 RISKFVMELNAGFRLLNLKND---HLRKRFDALKYDVKKIEEVVYDLSIRGL 748
RI +FV +++ L+ K D ++ + + + V KIE + + +RGL
Sbjct: 214 RICQFVRQIHRELMLVVPKMDDSYDMKSKMEVMLQSVIKIENACFSVHVRGL 265
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 308 IHRGPSQKVDELCHMPEKCRLHCSVL--LGALWSLPEI 201
+H G + KVD L + + C L C V LGA W++ ++
Sbjct: 128 VHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADV 165
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 308 IHRGPSQKVDELCHMPEKCRLHCSVL--LGALWSLPEI 201
+H G + KVD L + + C L C V LGA W++ ++
Sbjct: 157 VHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADV 194
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 431 LASHETMAEILGVSPVE-LKEGFHLDIEDY-LIGLLTMCSELSRLAVNSVTRGDYERPLR 604
L++ + MA I G +P E L + +ED LIGL+++ LS + +S + E P+R
Sbjct: 258 LSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLFDSLSSYSTSSGYSSEEEAPVR 317
Query: 605 ISKFVMELNAGFRL 646
+ + +++ R+
Sbjct: 318 TTSYGRSMSSSARM 331
>At5g51795.1 68418.m06422 Kin17 DNA-binding protein-related
Length = 347
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 437 SHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLAVNSV 574
SH+ ++LG +P + G+ + E + L+ SR+A V
Sbjct: 65 SHQRQMQVLGQNPTRVVNGYSQEFEQTFLDLMRRSHRFSRVAATVV 110
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 623 ELNAGFRLLNLKNDHLRKRFDALKYDVKKIEE 718
EL F ++ND LRK+ LK D+++ EE
Sbjct: 740 ELQNSFVQEKMENDELRKQVSNLKVDIRRKEE 771
>At5g41760.1 68418.m05084 nucleotide-sugar transporter family
protein low similarity to SP|Q61420 CMP-sialic acid
transporter {Mus musculus}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 340
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 413 WLEKGILASHETMAEILGVSPVELKEGFHLDIEDYLIGLLTMCSELSRLA 562
W+ G+LA T +++ G F I+ YL+G+L+ + LS LA
Sbjct: 134 WMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILS--AGLSALA 181
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 77 KHVKMCXNELINKIFSDFQKNLDQEQELRETIRTICKEVDQISREATTV 223
K VK C NEL ++ S N E++ T+ + +++DQ S + +
Sbjct: 142 KRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQPSHDEENI 190
>At2g43470.1 68415.m05402 expressed protein
Length = 498
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 71 LIKHVKMCXNELI-NKIFSDFQKNLDQEQELRETIRTICKE 190
L+ H K N++ N F + NLD +++RE I+++ KE
Sbjct: 131 LLNHNKQWFNQIYANLTFLNLTDNLDLFRKIRENIKSLLKE 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,204
Number of Sequences: 28952
Number of extensions: 338024
Number of successful extensions: 944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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