Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E21
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     32   0.48 
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         30   2.0  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  30   2.6  
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7)                     29   3.4  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   3.4  
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)                      29   3.4  
SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9)                   29   3.4  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)                29   3.4  
SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044)         29   4.5  
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                29   4.5  
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)                    29   6.0  
SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)                  28   7.9  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       28   7.9  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              28   7.9  

>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +3

Query: 603 KFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTKA 779
           +F+T +KEL  S  +  +E++ +    +DD      R ++++ +K +    D++ +  A
Sbjct: 53  EFETTMKELEQSYLREKEEIIKRLGSELDDNVQEKERMIEELEAKLQEKELDVQSVRDA 111


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
 Frame = +3

Query: 462  SSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSA 641
            + + LLKQ+     + + L S + DL   K        R A + VI +     + L    
Sbjct: 883  AQERLLKQKEQYEQKTLQLQSALNDLNVKKEEAEQSS-RSAAD-VISELQAHKQVLEQEI 940

Query: 642  CKSTDELLSQT---KKSIDDITTSARRSMDDISSKAKSTLDDIEKLTKANANQRS*KEE 809
              +  +L  +    K+++++   +  R M ++  + K   +D+EKL +A  ++   +EE
Sbjct: 941  LSNRKKLQMEAVAAKQALEETKLNQIRIMSELEKEKKKMQEDVEKLKEAKKHREKMREE 999


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = +3

Query: 579 QAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDD 758
           +A+E + GK   E+ +L  +     DE++ + +K   D+     R++    +K  + LD+
Sbjct: 182 KAVESLTGKHHEELDQLMKAHRVRYDEVVKEKQKVEKDLNEKLARALAQAEAKTDNALDE 241

Query: 759 IEKLTK 776
             ++ K
Sbjct: 242 KMRIEK 247


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 615 EIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLD--DIEKLTKANAN 788
           E+K+    +  S    LS  +K++D++  +  + + D+S++  +T+D  ++EK      +
Sbjct: 328 EVKKQTDDSQNSHASQLSALEKTVDEMKKALNQQLKDVSNRPAATVDMAEVEKFVGKKID 387

Query: 789 Q 791
           Q
Sbjct: 388 Q 388


>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 26/78 (33%), Positives = 39/78 (50%)
 Frame = +3

Query: 555 SLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISS 734
           S N GKGR+ I  V  + DTE  E  S      DE +++  K    I   +++ M D+  
Sbjct: 244 SRNKGKGRRQIRQVERESDTESSETES------DEDINRILKHHSTILDESKQ-MKDLDK 296

Query: 735 KAKSTLDDIEKLTKANAN 788
           + K+T   +E  T A+AN
Sbjct: 297 RVKTT---VEPDTGADAN 311


>SB_55202| Best HMM Match : FIVAR (HMM E-Value=3.7)
          Length = 145

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 603 KFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTKA 779
           +F  E K L  +  K+T ++++   K I   T   +   DD   KA+  L DIE+ + A
Sbjct: 17  EFVAEQKSLNENLQKAT-KMINAIDKQIKQKTKEIKEIFDDAKKKAEQKLRDIEEASSA 74


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
 Frame = +3

Query: 420  AVDETVRYTPHPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAG----KGRQAI 587
            A  +T + TP  S  +  +  + +    +  P +S     +  K+S  AG    K     
Sbjct: 1518 ASTDTAKVTPKASTDAPKVTPKASTDAAKVTPKASINTAKVALKVSTEAGKVTPKASTDA 1577

Query: 588  EWVIGKFDTEIKELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 767
              V  K  TE  ++   A  STD      K S D    + + S D      K++ D ++ 
Sbjct: 1578 AKVTPKASTEAAKVTPKA--STDSTKVTPKASTDAAKVTPKASTDAAKVTPKASTDAVKV 1635

Query: 768  LTKANAN 788
             +KA+ +
Sbjct: 1636 TSKASTD 1642


>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
          Length = 895

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/72 (19%), Positives = 36/72 (50%)
 Frame = +3

Query: 483 QEAVVTVQGVPLSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDEL 662
           Q A++ + G+P+   ++D++ +         ++ ++  I  FDT ++ + S++  S    
Sbjct: 513 QSALLLLHGIPVVYNLDDIIEDNEKKRKETEKKKLKESIESFDTSVESIGSNSTGSPGRD 572

Query: 663 LSQTKKSIDDIT 698
            S  ++ I  I+
Sbjct: 573 KSDKQRKITQIS 584


>SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9)
          Length = 576

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 633 SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTKANANQRS 797
           +S C + D    QT +     T S+RRS+   S K  ST+ + +K    N N+RS
Sbjct: 421 TSFCPAPDRP-GQTAEDKAKATKSSRRSVHSTSGKRPSTVAESKKPLLKNKNRRS 474


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 624  ELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEK 767
            E   S  ++ DE+     +++D+I  +  R++D+I       LD+I++
Sbjct: 1514 EADRSQSRALDEIDRNQSRALDEIDRNQSRALDEIDRNQSRALDEIDR 1561


>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
          Length = 320

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
 Frame = +3

Query: 516 LSSYMEDL--LTNKISLNAGKGRQAIEWVIGKFDTEIKELASSACKSTDELLSQTKK--- 680
           L S +EDL    NK+  +     + I  + G+ D E++ LA+   + +  L  + KK   
Sbjct: 154 LESRLEDLESANNKLHHSLKFKEEKISDLEGQID-ELESLAAEKNRLSQSLEQKMKKIME 212

Query: 681 ---SIDDITTSARRSMDDISSKAK--STLDD-IEKLTKANANQRS*KEE 809
               ++D+T   +R  + +  KAK   TL+D I +L +  A+ +  +E+
Sbjct: 213 LENRVEDLTCETQRLQNSVDQKAKRIQTLEDRISELEQLLASSQELRED 261


>SB_4040| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.00044)
          Length = 817

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
 Frame = +3

Query: 495 VTVQGVPLSSYME--DLLTNKISLNAGKGRQ-AIEWVIGKFD--TEIKELASSACKSTDE 659
           +T++ +    Y+     L  ++ L+AG GR  +   V    D  ++I+EL  +A +    
Sbjct: 278 LTMEQIEADFYLNLFSYLKTRVRLSAGYGRSLSSTGVEASVDIKSDIQELMKNATEYLTG 337

Query: 660 LLSQTKKSIDDITTSARRSMDDISSKAKSTLDDIEKLTKANANQ 791
            L   +K I+D     + +      KA    D  E++TK+   +
Sbjct: 338 KLEFARKRIEDAKGRIKDAKQTCMKKAAGACDVCEQITKSQIQE 381


>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 645 KSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDD 758
           +++D+L    K++ DD++   +R+ DD+S   K   DD
Sbjct: 610 RASDDLSLPNKRASDDLSLPNKRASDDLSLPNKRASDD 647



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 645 KSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDI 761
           K++D+     K++ DD++   +R+ DD+S   K   DD+
Sbjct: 599 KASDDPSLPNKRASDDLSLPNKRASDDLSLPNKRASDDL 637


>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 610 TLKLRSLQVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQKAH 750
           T  + + Q Q  + Q    H+   Q    QHQQ+ Q+   H  Q  H
Sbjct: 269 TTAITTTQQQQQQQQQQQQHQLHQQHQLHQHQQQHQYQQQHQHQHQH 315


>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
          Length = 1243

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 631 QVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQ 741
           Q Q ++ Q   +HKQ  Q    Q QQ  Q  I H KQ
Sbjct: 263 QRQQLQQQQIQHHKQHLQQQRQQRQQLQQQQIQHHKQ 299


>SB_56482| Best HMM Match : HEAT (HMM E-Value=1.9e-16)
          Length = 425

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 754 SSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELASSLISVSN 605
           +S L  LDE+  +D+    +   ++F   DNN +   + ELA  L+ +S+
Sbjct: 94  NSFLKDLDELLPLDVRVGYLPVLVEFLSTDNNRNWRFRQELAEQLMYLSD 143


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -1

Query: 796  LLWLALALVNFSISSSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAEL 632
            LLW+ALALV F  ++    AL   S +D  + +V   ++  + D+ S  L +A+L
Sbjct: 860  LLWVALALVQF--AAIYKDALKVFSRVD-FSIIVKDFLNSVITDSKSKALSRAKL 911


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 603 KFDTEIKELASSACKSTDELLSQTKKSIDDIT--TSARRSMDDISSKAKSTLDDIEKLTK 776
           K   ++ E  S      D+    T +S  D +  TS ++ +DD   K+ S ++++EK+ +
Sbjct: 148 KLRQKVNEHESCLHAEVDKYFKDTYQSELDASNFTSIKKRLDDFIEKSSSCIENVEKVLQ 207

Query: 777 A 779
           A
Sbjct: 208 A 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,807,155
Number of Sequences: 59808
Number of extensions: 521151
Number of successful extensions: 1449
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)