Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E18
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 38 0.002
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 1.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 28 1.5
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 1.9
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 26 4.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 7.8
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 25 7.8
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = +1
Query: 250 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 429
I L ++K W L++EEKK Y +F + + + V W V +
Sbjct: 55 ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112
Query: 430 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 552
+ +P P +++ E Q+ + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = -2
Query: 640 TISSXHYNPEVFTRQCSIKFTSSGCFRSPTWRQVHRWDSP*GPTFS-GAEPSASL--HSM 470
T S H N E+ + + SS F SP +HR SP P S G E L S+
Sbjct: 79 TSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHR-SSPKRPHDSLGEESPGKLLRTSV 137
Query: 469 SQE*DCTQRLSWPCRSKQPK 410
QE D + + P + K K
Sbjct: 138 KQEPDSEEEIDSPTKKKSFK 157
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 217 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 309
P FR + + K RE++K +W+K E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 235 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 378
ED + K RE++K +W+K E+K +A + E++ EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 235 EDTPDIKALREKEKGDWRKLTLEEK 309
ED + K RE++K +W+K E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 235 EDTPDIKALREKEKGDWRKLTLEEK 309
ED + K RE++K +W+K E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 603 LASAVSNLLPAVV-FVVPLGGKSIDGIHLKVQHSLELSL 490
LA V ++L V +VP G K I IHLK S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 23 SSPILPAKWPILXCAGRSSMLSV 91
S+ +LP+ PIL GRSS LSV
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSV 453
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 250 IKALREKEKGDWRK---LTLEEKKTLYR 324
I+ALREK K K L LEEKKT Y+
Sbjct: 49 IEALREKAKEKKEKERILALEEKKTNYK 76
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 373 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 549
WK + G L +S + I + VY P+ D + Q A L+R+ + + +AS
Sbjct: 79 WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 460 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 567
+P + ERQ ++ +L+ +P+DG ++ DY N
Sbjct: 27 LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,923
Number of Sequences: 5004
Number of extensions: 58735
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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