Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E18
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)                    30   2.0  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.7  
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             29   3.6  
SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)                   29   4.7  
SB_13017| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-10)          28   6.2  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                28   6.2  
SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   28   8.2  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              28   8.2  

>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 27/80 (33%), Positives = 45/80 (56%)
 Frame = +1

Query: 211 PLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVG 390
           P+P  R +E   D++AL+ KEKG W  L+ E++  LY++ F +T  E +      K VVG
Sbjct: 26  PVPIAR-QEFGSDLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQESKLGEPYAKKVVG 84

Query: 391 WALVLSSLAAWIYMAMKVFV 450
              VL SL+   +  ++ ++
Sbjct: 85  GVGVLISLSLAFFAFLRTYM 104


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +1

Query: 208  FPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAE-FQAPTGEWKGV 384
            FPLP   F        +LR  ++    +L+   ++   RA+  +   E F++P G  KG 
Sbjct: 1034 FPLPVGFFCLVYCLFMSLRGTQRNS-NELSESYRERETRAAVLEVVCEAFRSPAGSSKGA 1092

Query: 385  VGWALVLSSLAAWIYMAMKVFVYSP 459
            V W  VL++   ++++ +  F+ SP
Sbjct: 1093 VYWESVLTA-RRFVFLCLAAFIKSP 1116


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +2

Query: 23  SSPILPAKWPILXCAGRSSMLSVF--LSAPGXXXXXXXXXXXXXXXXG*AMVSTASPTT* 196
           SSP+LP    +L  +  SS ++     SAP                   A+ S+ SPTT 
Sbjct: 671 SSPVLPTTTSVLTSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSVSPTTT 730

Query: 197 XGLTSPCLPSGSVRTPLTLRLSVK 268
             LTS    S    T  T   S++
Sbjct: 731 SVLTSSMEFSSMATTSTTTTPSLE 754



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +2

Query: 17  SNSSPILPAKWPILXCAGRSSMLSV-FLSAPGXXXXXXXXXXXXXXXXG*AMVSTASPTT 193
           + SSP+LP    +L  +  SSM +    S P                   A+ S   PTT
Sbjct: 517 ATSSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTSTLAEAVAISSLVLPTT 576

Query: 194 *XGLTSPCLPSGSVRTPLT 250
              LTS  + S S+ T  T
Sbjct: 577 TSVLTS-SMESSSMATTST 594


>SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 506 ECWTLR*IPSMDLPPSGTTKTTAGSK 583
           +C T+R IPS D+P +G  KT  GS+
Sbjct: 170 QCNTIRGIPSFDMPFNGVLKTGNGSQ 195


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 283 WRKLTLEEKKTLYRASFCQTFAEFQAPTGEW 375
           WRK +  EKK +     C+T + +  P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = -3

Query: 213 GEVRPXYVVGLAVETIAYPLTXTKLGKFSVXSGXSPGADRNTXSIDERPAXQR 55
           G  RP   + L VET   P   TK  K S   G  PG  R+  S   RP  +R
Sbjct: 573 GSKRPS--IDLEVETTPVPSKKTK--KESSTKGTGPGRPRSDSSGSSRPRSRR 621


>SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)
          Length = 431

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 280 DWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVG 390
           +W +LT+ E  TLY             P  +W G+VG
Sbjct: 299 EWLQLTVRELTTLYEVFSTNNHHPTNIPLSKWLGLVG 335


>SB_13017| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-10)
          Length = 520

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 685 ESHLLFYTDVYSL-KYTISSXHYNPEVFTRQCSIKFTSSGCFRS 557
           +S L F+ ++ S+ KY+     Y P   +    IKF    CF S
Sbjct: 369 DSSLKFWCELLSVDKYSCQDEKYQPNSTSDHYEIKFVGGACFAS 412


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 451  TQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 332
            T   S P +S    M    PN  +PST + GP   RR +R
Sbjct: 1035 TPNTSMPTKSTPTSMPRKTPNTFIPSTPQVGPTPPRRGNR 1074


>SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 612 KCLLASAVSNLLPAVVFVVPLGGKSIDG 529
           KC+LA  + +L+P V+   P+ G  +DG
Sbjct: 53  KCMLACEIFSLVPGVLIGFPVVGFPVDG 80


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 262 REKEKGDWRKLTLEEKKTLYRASFCQT 342
           RE  + D ++  +E+KK + +A+FCQT
Sbjct: 77  REILENDEKRCPIEDKKKVKKATFCQT 103


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
 Frame = +1

Query: 109 AGSTGNTELAKLGXREWVGYGFN--GQPNYVXRPDFPL---PAIRFREDTPD--IKALRE 267
           AGS  NT LA+   R W  YGF+    P Y    + P+   P+     D     +     
Sbjct: 27  AGSPRNTLLAEEIARRWRSYGFDKVEMPRYNVLQNLPMEEDPSFAAIVDDKGAILHQFPR 86

Query: 268 KEKGDWRKLTL 300
           K   +WRK TL
Sbjct: 87  KRDREWRKGTL 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,946,685
Number of Sequences: 59808
Number of extensions: 467257
Number of successful extensions: 1190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)