Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E18
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    31   0.72 
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    30   1.3  
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At1g67650.1 68414.m07720 expressed protein                             29   2.2  
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi...    29   2.9  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.8  
At5g61580.1 68418.m07727 phosphofructokinase family protein simi...    28   6.7  
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF...    27   8.9  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    27   8.9  
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    27   8.9  

>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +1

Query: 226 RFREDTPDIKALRE--KEKGD-WRKLTLEEKKTLY 321
           +++E+ PD+K++RE  K  G+ W+ +T EEK   Y
Sbjct: 80  QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYY 114


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 157 WVGYGFNGQPNYVXRPDFPLPAIRFREDTPDIKA 258
           W    F G   Y+ R +F LP+I   E TP+ KA
Sbjct: 346 WKIKSFPGNKEYMLRAEFHLPSITAEEATPERKA 379


>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to RING-H2 finger
           protein RHG1a [Arabidopsis thaliana] GI:3822225;
           contains Pfam profile: PF00097 zinc finger, C3HC4 type
           (RING finger)
          Length = 343

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 681 HIYYFTQMFILLNTQFLLYTTTQKCLLASAVSNLLPAVV 565
           H+Y+ T +F+  +  F ++     CL+  A+   LP ++
Sbjct: 190 HLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCII 228


>At1g67650.1 68414.m07720 expressed protein
          Length = 651

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 505 SGAEP--SASLHSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 332
           SGA+P    S  S+SQE    +++    + K PK   LE +   P   RW P  +R S R
Sbjct: 535 SGAKPIEGISAASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYR 594

Query: 331 MK 326
            K
Sbjct: 595 PK 596


>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
           hypothetical protein PID:e326839 (gb|Z97337) contains
           transmembrane domains
          Length = 416

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 226 RFREDTPDIKALREKEKGDWRKLTLEEK--KTLYRASFCQTFAEFQAPTGEWKGVVGWAL 399
           R    TP I  LREK + D  KLTL  +  KTL R      F   +  +      VGW +
Sbjct: 6   RASSKTPAISGLREKHQQDLEKLTLTSQPFKTL-RLFVVAVFLYVRRWSSYLLANVGWLI 64

Query: 400 VLSSL 414
           +  S+
Sbjct: 65  LFCSI 69


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 220 AIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYR 324
           A+  +  TP IKA++E+  GD  K+ LE  + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699


>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 530

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 172 FNGQPNYVXRPDFPLPAIRFREDTPDIKALREK 270
           FN   N + R DFPLPA++ ++ +   + L +K
Sbjct: 18  FNPSSNVLPRRDFPLPALKLKKVSVLPRILHQK 50


>At1g78310.1 68414.m09126 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 311

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 151 REWVGYGFNGQPNYVXRPDFPLPAIRFREDTP 246
           + W G GFN +P     P  PLP +    ++P
Sbjct: 158 QNWTGVGFNLRPTAPLSPLPPLPPVHAAAESP 189


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 235 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 324
           ED P I     + KGDW K  + E+ + YR
Sbjct: 241 EDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 157 WVGYGFNGQPNYVXRPDFPLPAIRFREDTPDIKA 258
           W    F G   +  + DF LP+I   E TP+ KA
Sbjct: 346 WKIQYFYGNKEHTLKADFHLPSIAAEEATPERKA 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,481
Number of Sequences: 28952
Number of extensions: 322696
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)