Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E17
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   8.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 797 PVWPVNCPHCCPVSMSHSAQVMSPELVRIWLSSRKRQQ 684
           P+ P+   +C PV   + + ++SP  VR  LSS +  Q
Sbjct: 786 PILPMIPVYCVPVPQVNDSTILSP--VREKLSSSQPMQ 821


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 649 TRARCPRASSGYKSSRC 599
           TR RC R+  GY  + C
Sbjct: 106 TRVRCGRSLEGYPFNPC 122


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 185 AHVQHATHRSILFYNVLSNILAGL 114
           AHV H  HR  +F   +  I++GL
Sbjct: 168 AHVTHPRHRLCVFVAGVVFIVSGL 191


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 649 TRARCPRASSGYKSSRC 599
           TR RC R+  GY  + C
Sbjct: 122 TRVRCGRSLEGYPFNPC 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,182
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)