Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E15
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    35   0.010
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    32   0.073
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.7  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.3  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +2

Query: 479 VSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           V++  ++CS  G   L AGG ++DAA+A+ +C+
Sbjct: 102 VATEEETCSQIGVGILKAGGNAVDAAIASGICI 134


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V+S    CS  G   L  GG ++DAA+A+  C+
Sbjct: 83  AVASEVPVCSDIGVSMLADGGNAVDAAIASTFCI 116


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -2

Query: 301 PLLEEIVSRDCPGXSGSRLASSTALKCSRNKLEMDTCTKSLDTARYNVL 155
           P+ ++++   CP  SG  +   T    + N +    C K+    RY ++
Sbjct: 283 PIFKQVLREGCPDASGLEVLDLTICPTNGNLVSFLVCWKNSINYRYMII 331


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 301  PLLEEIVSRDCPGXSGSRLASSTALKCSRNKLEMDTCTKSLDT 173
            PLLE   S++  G    RLA + AL  +   L +D CT +LD+
Sbjct: 1228 PLLE--FSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDS 1268


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 198 SISNLFLEHFRAVEDASREPXHPGQSRLTISSRRG 302
           S+  LFL H +A  +    P H  Q R  +S +RG
Sbjct: 209 SLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRG 243


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 585 PWSRHSAAATAASMERPP 532
           P SR SAAA AA+ +RPP
Sbjct: 295 PSSRVSAAALAANKKRPP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,127
Number of Sequences: 5004
Number of extensions: 23449
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)