Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E15
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 38 0.006
01_01_0350 + 2782189-2782650,2783778-2783798,2787172-2787690,278... 37 0.011
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 36 0.032
08_02_0813 + 21459776-21461128 30 1.6
07_01_0568 - 4216898-4216911,4216997-4217024,4217265-4217335,421... 29 3.7
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 29 3.7
12_01_0904 + 8791474-8792261,8792935-8793037,8794009-8794055,879... 28 4.9
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 28 4.9
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 6.5
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 28 6.5
02_01_0613 - 4594749-4595333 28 6.5
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 27 8.5
04_01_0328 - 4330904-4333129 27 8.5
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
+V++ CS G L AGG + DAAVAAALCL
Sbjct: 84 AVAADDGRCSEVGAAALRAGGHAADAAVAAALCL 117
>01_01_0350 +
2782189-2782650,2783778-2783798,2787172-2787690,
2787780-2788015,2788110-2788242,2788482-2788547,
2789200-2789454
Length = 563
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
+V++ CS G L AGG ++DAAVAA LCL
Sbjct: 80 AVATDDGRCSEVGAAALRAGGHAVDAAVAATLCL 113
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
+V++ CS G + L GG ++DAAVAA+LCL
Sbjct: 43 AVAADDGRCSRIGRDALRDGGNAVDAAVAASLCL 76
>08_02_0813 + 21459776-21461128
Length = 450
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 585 PWSRHSAAATAASMERPPAFSVSVPAPEHDFAXEDTLAVRDHLI 454
PW + ++ + S+E PPAF+ PA E E HLI
Sbjct: 275 PWFKKTSISRPVSIELPPAFADPAPAKEEAEKDEPETLNAFHLI 318
>07_01_0568 -
4216898-4216911,4216997-4217024,4217265-4217335,
4218026-4218140,4218245-4218314,4218552-4218646,
4219320-4219379,4219476-4219547,4219676-4219819
Length = 222
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 310 GAPPLLEEIVSRDCPGXSGSRLASSTALKCSRNKLEMDTCTKSLDTARYNVLI 152
G P L E+V G G +L+SS K K S + RYN L+
Sbjct: 142 GLPLLKVEVVDLLSGGAEGEKLSSSALRKLEAEKANQQEGAASKELMRYNSLL 194
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 209 LISRALQSSRRCKPRARXPGAVPTHNLLQEGWSS 310
L+S A ++S R PRA GA+P H + + SS
Sbjct: 16 LLSTAAEASSRRPPRAPLSGAIPKHEVAKAEASS 49
>12_01_0904 +
8791474-8792261,8792935-8793037,8794009-8794055,
8795180-8795717
Length = 491
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 585 PWSRHSAAATAASMERPPAFSVSVPAPEHD 496
P HSAA AA+ PP S P P HD
Sbjct: 85 PNPHHSAAPAAAANAPPPLRRNSFPQPAHD 114
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 497 SCSGAGTETLNAGGRSMDAAVAAAL 571
S SG+G+ + +AGGRS+ AA AL
Sbjct: 617 SSSGSGSSSGSAGGRSLSAAAKIAL 641
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 521 TLNAGGRSMDAAVAAALCLDHGRA 592
T GGR AA AA L L HGR+
Sbjct: 71 TARKGGRPRTAAAAATLSLPHGRS 94
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 570 SAAATAASMERPPAFSVSVPAPEHDFAXEDTLAVRDHLIISVVY 439
SA E PP S P+P +FA T D LII+V+Y
Sbjct: 370 SAPKQHPESEAPPLAPSSAPSPREEFAWPLT-DEEDELIINVLY 412
>02_01_0613 - 4594749-4595333
Length = 194
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 491 AKSCSGAGTETLNAGGRSMDAAVAAALCL 577
+K G G T GGR M AA AAAL L
Sbjct: 5 SKLAGGGGDVTFVGGGRRMAAAAAAALRL 33
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 268 PGXSGSRLASSTALKCSRNKLEMDTCTKSLDTARYNVLI 152
PG S + T L+ R +E +TC ++TAR+N+ I
Sbjct: 1143 PGFSSEGSENGTPLESDRT-MEGETCDIDIETARHNLEI 1180
>04_01_0328 - 4330904-4333129
Length = 741
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 591 ARPWSRHSAAATAASMERPPAF 526
AR WS+H AAA AA+ P F
Sbjct: 572 ARVWSKHQAAAAAAAAAVPRKF 593
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,677
Number of Sequences: 37544
Number of extensions: 202870
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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