Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E15
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             37   0.014
SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_55760| Best HMM Match : G_glu_transpept (HMM E-Value=0.0012)        33   0.17 
SB_33136| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       29   2.8  
SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)                     29   3.7  

>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 473 ASVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           A+V++  + CS  GT+ L  GG ++DAA+  ALC+
Sbjct: 94  AAVAADHELCSKLGTQALKDGGHAVDAAIVTALCV 128


>SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V++ AK+CS  G   L   G ++DAA+A  LC+
Sbjct: 55  AVAADAKNCSAIGVNILKRKGSAVDAAIATMLCV 88


>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V++ AK+CS  G   L   G ++DAA+A  LC+
Sbjct: 215 AVAADAKNCSAIGVNILKRKGSAVDAAIATMLCV 248


>SB_55760| Best HMM Match : G_glu_transpept (HMM E-Value=0.0012)
          Length = 204

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 479 VSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           VSS A  CS  G + L  GG ++D+AVA+  C+
Sbjct: 54  VSSDADECSELGAKMLIKGGSAVDSAVASLFCV 86


>SB_33136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 473 ASVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           A+V++    CS  G + L   G ++DAA+A  LC+
Sbjct: 73  AAVAADNSRCSEIGRDVLKKQGTAVDAAIATMLCV 107


>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 470 TASVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           + +V++ A  CS  G + L   G ++DAA+A++ C+
Sbjct: 105 SGAVATDAGMCSEIGRDILKKQGSAVDAAIASSFCI 140


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 18  LRRRPHAQLLSLGLRYLQTFY*RERC*KR----KTQCVQCYELCVFVITISTLYRAVSSD 185
           L R    +L+SLG+  +  F    RC +     K +C+   + C         YR V  D
Sbjct: 647 LARTALLKLVSLGMILVSLFLDVSRCRQGLPLGKDKCLSLMKQCWETYIGIVFYRLVIVD 706

Query: 186 FVHVSISNLFLEHFRAV 236
           FV + +S+ F E  R +
Sbjct: 707 FVFLLLSSFFGEFIRRI 723


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 509 AGTETLNAGGRSMDAAVAAAL 571
           AG +TL  GG +MDA +A AL
Sbjct: 79  AGAKTLEKGGNAMDACIATAL 99


>SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)
          Length = 472

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 497 SCSGAGTETLNAGGRSMDAAVAAAL 571
           S +GAG    +AGG S+ AA AAAL
Sbjct: 187 SSAGAGAGATSAGGSSLAAATAAAL 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,910
Number of Sequences: 59808
Number of extensions: 222217
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)