Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E15
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39650.1 68417.m05606 gamma-glutamyltranspeptidase family pro...    38   0.004
At4g39640.2 68417.m05603 gamma-glutamyltranspeptidase family pro...    35   0.047
At4g39640.1 68417.m05602 gamma-glutamyltranspeptidase family pro...    35   0.047
At4g29210.2 68417.m04178 gamma-glutamyltranspeptidase family pro...    33   0.19 
At4g29210.1 68417.m04179 gamma-glutamyltranspeptidase family pro...    33   0.19 
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    27   9.4  

>At4g39650.1 68417.m05606 gamma-glutamyltranspeptidase family
           protein SP|P07314 Gamma-glutamyltranspeptidase precursor
           (EC 2.3.2.2) (Gamma- glutamyltransferase) (GGT) {Rattus
           norvegicus}; contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 574

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V++    CS  GT  L  GG ++DA+VAAALCL
Sbjct: 35  AVATDDGRCSAIGTNVLRQGGNAIDASVAAALCL 68


>At4g39640.2 68417.m05603 gamma-glutamyltranspeptidase family
           protein similar to SP|P19440
           Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)
           (Gamma-glutamyltransferase 1) (CD224 antigen) {Homo
           sapiens}; contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 572

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V++    CS  G   L  GG ++DA+VAAALCL
Sbjct: 35  AVATDDGRCSVIGMRVLREGGNAIDASVAAALCL 68


>At4g39640.1 68417.m05602 gamma-glutamyltranspeptidase family
           protein similar to SP|P19440
           Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2)
           (Gamma-glutamyltransferase 1) (CD224 antigen) {Homo
           sapiens}; contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 572

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 SVSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           +V++    CS  G   L  GG ++DA+VAAALCL
Sbjct: 35  AVATDDGRCSVIGMRVLREGGNAIDASVAAALCL 68


>At4g29210.2 68417.m04178 gamma-glutamyltranspeptidase family
           protein similar to SP|P07314
           Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)
           (Gamma- glutamyltransferase) (GGT) {Rattus norvegicus};
           contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 512

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 479 VSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           V++    CS  G   L +GG ++DAAVA  LC+
Sbjct: 83  VAADDARCSEIGASVLRSGGHAVDAAVAITLCV 115


>At4g29210.1 68417.m04179 gamma-glutamyltranspeptidase family
           protein similar to SP|P07314
           Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)
           (Gamma- glutamyltransferase) (GGT) {Rattus norvegicus};
           contains Pfam profilePF01019:
           Gamma-glutamyltranspeptidase
          Length = 637

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 479 VSSXAKSCSGAGTETLNAGGRSMDAAVAAALCL 577
           V++    CS  G   L +GG ++DAAVA  LC+
Sbjct: 83  VAADDARCSEIGASVLRSGGHAVDAAVAITLCV 115


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to TGF-beta resistance-associated  protein TRAG
           (GI:15624071) {Mus musculus};  similar to
           beta-transducin repeats containing protein - Homo
           sapiens,PID:e1284220; 3' EST no_NP:TC8031
          Length = 1446

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 166 TVQYPVISCTCPF 204
           +++YP I CTCPF
Sbjct: 755 SIRYPSIKCTCPF 767


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,612
Number of Sequences: 28952
Number of extensions: 137618
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)