Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E13
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 155 5e-39
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 118 1e-27
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 79 6e-16
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 64 3e-11
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 60 5e-10
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 56 8e-09
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 56 8e-09
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 37 0.004
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 31 0.26
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 1.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 2.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 7.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 10.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 10.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 10.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 10.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 10.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 10.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 10.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 10.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 10.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 10.0
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 10.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 10.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 10.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 10.0
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 155 bits (377), Expect = 5e-39
Identities = 78/170 (45%), Positives = 111/170 (65%), Gaps = 1/170 (0%)
Frame = +1
Query: 157 AVATIQKKTATTNPGPGGVRKKSGPKFELTEEQKRDIKEAFDLFDTENTGKIDTKELKVA 336
A A ++++ ++P P + + + E+TEEQ++DI EAF LFD++ ID EL+ A
Sbjct: 3 ANARAKRRSRASSPTPARLGGYAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAA 62
Query: 337 IRALGFEPXXXXXXXXXXXXXX-GDGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDD 513
+RALGF G G + +DF+ +M+ K+ E+D EEI +AF+LFDDD
Sbjct: 63 MRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDD 122
Query: 514 ETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIM 663
ETGKIS +NL+RVAKEL EN+ D+EL MI+E D D DGEIN++EF+ IM
Sbjct: 123 ETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 118 bits (283), Expect = 1e-27
Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Frame = +1
Query: 241 LTEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXX-GDGKV 417
LT+EQ + +EAF LFD + G I + EL V +R+LG P G+G +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 418 SFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHE 597
F +F+ +M+ KM + D EE+ +AFK+FD D G I+ + L V LGE L+ EE+ +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 598 MIDEADRDGDGEINQEEFLRIM 663
MI EAD DGDG IN EEF R++
Sbjct: 126 MIREADTDGDGVINYEEFSRVI 147
Score = 57.2 bits (132), Expect = 3e-09
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 478 EIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLR 657
E +AF LFD D+ G I+ L V + LG++ T EL +MI+E D DG+G I+ EFL
Sbjct: 13 EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLT 72
Query: 658 IMKK 669
+M +
Sbjct: 73 MMAR 76
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 79.4 bits (187), Expect = 6e-16
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Frame = +1
Query: 244 TEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSF 423
++EQ ++KEAF L+D + G I T + +R+LG GD +
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGIN--VTDAELAKLSNELGDA-IDE 60
Query: 424 DDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMI 603
FM +S K+ E ++ EE +KAF++FD D +G I K LGE L+D E+ M+
Sbjct: 61 KKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMV 120
Query: 604 DEADRDGDGEINQEEFL-RIMKK 669
EAD G + +F+ RIM K
Sbjct: 121 QEADPTNSGSFDYYDFVQRIMAK 143
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/66 (34%), Positives = 41/66 (62%)
Frame = +1
Query: 457 AEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGEI 636
A K+ +E+ +AF L+D D+ G I ++ V + LG N+TD EL ++ +E GD I
Sbjct: 3 ASKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL---GDA-I 58
Query: 637 NQEEFL 654
++++F+
Sbjct: 59 DEKKFM 64
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 63.7 bits (148), Expect = 3e-11
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Frame = +1
Query: 244 TEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSF 423
+ E+ I++ F D +G ID E ++I ++ P GD V F
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEF-LSIPSVASNPLASRLFSVVDEDGGGD--VDF 75
Query: 424 DDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELHEM 600
+F+ +SV + E++ AFK++D D G IS L V K + G NL +++L ++
Sbjct: 76 QEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135
Query: 601 ID----EADRDGDGEINQEEFLRIMKKTSL 678
+D E D+D DG+I+ EEF I+ +++
Sbjct: 136 VDKTIMEVDKDRDGKISFEEFKDIVSGSNV 165
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 59.7 bits (138), Expect = 5e-10
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Frame = +1
Query: 268 KEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSFDDFMELMS 447
K+AF LFD TG+I + +RA G P +V + F+++++
Sbjct: 9 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLP---AEVDMEQFLQVLN 65
Query: 448 VKMA--EKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRD 621
EE +K F++FD D TG I L+ V LGE L++EE+ E++
Sbjct: 66 RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK 125
Query: 622 GDGEINQEEFLRIM 663
DG +N +F++++
Sbjct: 126 -DGMVNYHDFVQMI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 55.6 bits (128), Expect = 8e-09
Identities = 29/130 (22%), Positives = 60/130 (46%)
Frame = +1
Query: 214 RKKSGPKFELTEEQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXX 393
R SG +LT Q +++KEAF L D + G I +++K + +L +
Sbjct: 33 RASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFES 92
Query: 394 XXXGDGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGEN 573
+ ++ F+ M + R ++++AF FDD ++GKI ++ +G+
Sbjct: 93 I---NPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDR 149
Query: 574 LTDEELHEMI 603
+ +E+ ++
Sbjct: 150 MDPQEVESIL 159
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/73 (41%), Positives = 44/73 (60%)
Frame = +1
Query: 442 MSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRD 621
MSV + EE +AF LFD G I F++L+R +LGENLT E+L M+D A
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGT- 59
Query: 622 GDGEINQEEFLRI 660
+G++++EEF +
Sbjct: 60 -NGKVSREEFAEL 71
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +1
Query: 250 EQKRDIKEAFDLFDTENTGKIDTKELKVAIRALGFEPXXXXXXXXXXXXXXGDGKVSFDD 429
E + +EAFDLFD + G ID ++L+ + LG E +GKVS ++
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLG-ENLTKEQLQLMLDLAGTNGKVSREE 67
Query: 430 FMEL 441
F EL
Sbjct: 68 FAEL 71
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/100 (24%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Frame = +1
Query: 406 DGKVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVA----KELG-- 567
+G + F +F+ +SV + + ++++ AF+L+D D G IS+ + R+ K +G
Sbjct: 77 NGYIDFKEFICALSVT-SRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSM 135
Query: 568 ------ENLTDEELHEMIDEADRDGDGEINQEEFLRIMKK 669
E+ ++ ++++ + D++ DG++ EEF K+
Sbjct: 136 VKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 30.7 bits (66), Expect = 0.26
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 49 MSAFSCKYNFCIIKCSDKSFLVFYKPTDIHK*IMATAVAT-IQKKTATTNP 198
M FS Y F C++ F F + K I ATA+A + K+ TNP
Sbjct: 77 MMGFSTNYQFVCKHCTEDGFERFERGVSAWKAITATAMANLVVKRYVETNP 127
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 532 FKNLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEE 648
F + V + E +EE EM +E D +G+G+ +EE
Sbjct: 164 FDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 512 SSSNSLNAFMISSLVSFSAIFTDM---SSIKSSNDTF 411
+S NSLN+++ SSL+S +IF +SI SS +F
Sbjct: 17 ASKNSLNSYLASSLMSHDSIFDGPGLGTSIPSSVSSF 53
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = -3
Query: 524 LPVSSSSN-SLNAFMISSLVSFSAI---FTDMSSIKSSNDTFPS 405
+P SSSS+ S + ISS +S S+I F+ +SSI SS+ + PS
Sbjct: 545 IPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPS 588
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 502 FDDDETGKISFKNLKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIMKKTSL 678
+ +D G+ + + L K GEN+ + + D D I +EE + I +KT L
Sbjct: 171 YGNDSLGESNLEELPTSDKIKGENMGSRKKRKGFVIDSEDSDTGIPREENVTITRKTKL 229
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 541 LKRVAKELGENLTDEELHEMIDEADRDGDGEINQEEFLRIMKKTSL 678
++ +AK L +L M++E D D ++ +EF + K+ S+
Sbjct: 969 IENIAKYLASVRERRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSV 1014
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 589 LHEMIDEADRDGDGEINQEEFLRIMKKT 672
L ++ + DRD DG +N EE + + T
Sbjct: 309 LVDLFYQFDRDNDGALNNEELSALFRHT 336
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 10.0
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +1
Query: 412 KVSFDDFMELMSVKMAEKDTREEIMKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 591
K+SFD EL +++ EE ++ L + DE+ + + + EL
Sbjct: 151 KISFDSVAELAKESDEKQNAYEEKIEERILANPDESDDVMLAARDAIFSKGQSKRIWNEL 210
Query: 592 HEMIDEAD 615
+++ID +D
Sbjct: 211 YKVIDSSD 218
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 526 ISFKNLKRVAKELGENLTDE 585
I F+N+++ +ELG++L DE
Sbjct: 297 IGFENIEQYLRELGKSLVDE 316
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 260 ETSKKHLIYLIQKILEKSTPK 322
+TS +HLI L KIL K P+
Sbjct: 25 QTSDEHLINLFAKILSKHVPE 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,826
Number of Sequences: 5004
Number of extensions: 63361
Number of successful extensions: 239
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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