Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E12
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.15 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.4  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   3.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   7.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   7.3  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   7.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.6  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   9.6  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 604 SLEHMFGGKSTSFSAPRYWARIVHSLDTQSSDHCTSSQ*IVSSFNRQQ 461
           SL H F   S++F  P        S+DT SS H  S++ I ++ + QQ
Sbjct: 223 SLPHSFASPSSTFEQPHTVQSRAPSVDTTSSSHSFSARNIPANVSMQQ 270


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 360 WCQVHKLIMKLYHLDIATHQ 301
           +C++ KL+++ Y LDIA HQ
Sbjct: 501 FCKLAKLLLRKYPLDIAEHQ 520


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 585 PNMCSNDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWNQSCVGH 722
           P+ C+ + +DLL +     P      IE+ T    DE+ + +C+ H
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIEVLTHPFFDELRDPNCMYH 320


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +3

Query: 534  CTILAQYLGALNDVLFPPNMCS---NDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWN 704
            C +LA Y   L+D+            D  D+++   KD  G+L PKI   T  +    W 
Sbjct: 1242 CELLA-YFETLDDISVASRYKGWVITDEYDMMLLARKDGSGVLEPKIAANTVNQYPSEWE 1300

Query: 705  Q 707
            +
Sbjct: 1301 K 1301


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 571 SFSAPRYWARIVHSLDTQ 518
           +F APRY   IVHSL+ +
Sbjct: 584 NFEAPRYKTNIVHSLNNE 601


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 LIYLNKILHIISRPIKTHN 116
           LIYL  +LHII R +K  N
Sbjct: 173 LIYLYNVLHIIHRDLKPSN 191


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 289 LCISISTVNSMIFGILIASIFH*HYRYEILY 197
           LC SI +   ++FG++   I    Y+YE++Y
Sbjct: 646 LCYSIISPLILVFGLIYFIIGFLVYKYELIY 676


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 507 WSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGVDLLM 623
           WS +CV    T  A ++  LN  LFP +      + +L+
Sbjct: 115 WSTECVEERRTTYAPFIEELNS-LFPSDSIDRSKIRVLV 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,985
Number of Sequences: 5004
Number of extensions: 74330
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)