Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E12
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0090 - 637141-640263                                             30   1.9  
03_05_0218 + 22058304-22058795                                         30   2.5  
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870...    29   4.4  

>02_01_0090 - 637141-640263
          Length = 1040

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 673  PRKFA*TKCGISRASVTSSRPPAIAITIPPDRRLFVTPPNT 795
            PR+ + +  G + A   +  PPA+A  +  D+ +F T P++
Sbjct: 997  PRRKSGSSTGSASAKAPTPAPPAVAAVVDKDKPVFTTTPDS 1037


>03_05_0218 + 22058304-22058795
          Length = 163

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 655 RRKSRSPRKFA*TKCGISRASVTSSRPPAIAITIPPDRRLFVTPPNT 795
           RR++   R  A T    +R+SV  + PPA+A+  PP   +  +P  T
Sbjct: 68  RRRAGRGRGSASTALPTTRSSVAVAEPPAVAVAEPPPVTVVQSPAVT 114


>04_04_0995 +
           29985473-29985625,29986372-29986446,29986537-29987044,
           29987349-29987734,29988418-29988641,29988728-29988893,
           29989095-29989226
          Length = 547

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 333 SLSVYALGTSYQTCMLPPIFPLTFKDVFYFRKRFQETCALNNICCLLKDETIYCE 497
           + SV  L     TC++PP +P      F    ++ +T  ++++C +L  +TI+ +
Sbjct: 108 TFSVQHLAPISFTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLML--DTIWSQ 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,557
Number of Sequences: 37544
Number of extensions: 449630
Number of successful extensions: 1084
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)