Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E12
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3) 43 3e-04
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.84
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 29 3.4
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 29 5.9
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.9
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 29 5.9
SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3)
Length = 198
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +3
Query: 240 INMP-KIIELTVEIEIQRVSCPG-VWLCQDGRVSLSVYALGTSYQTCMLPPIFPLTFKDV 413
+ MP K I TVE++ V+CPG + L V + + LG + +T + FPL F +
Sbjct: 103 LKMPQKAITCTVELDAYTVTCPGTLHLADRNMVYMLFHILGQTNRTKSVFATFPLNFNER 162
Query: 414 FYFRKRFQETCALNNICCLLKDETIYCEL 500
F + F ++ LL+ +T+ C L
Sbjct: 163 MVFERTFTGVSEPTDVVDLLEGKTLRCIL 191
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -1
Query: 659 RRQDTRKILRSSH*QVHSVIRTHVRREKHIIQRAKVLGEDRAFIGHTVF*PLHQLAINSF 480
RRQ+ +LR+S ++ + R + R K ++QRA V+ F GH + +L +
Sbjct: 1592 RRQELA-LLRASTIRIQACFRRYTARRKFLVQRAAVVRIQSGFQGHIARRKIQRLRTANS 1650
Query: 479 VLQ 471
+LQ
Sbjct: 1651 LLQ 1653
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 31.5 bits (68), Expect = 0.84
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 612 PLRH*NTCSAG-KAHHSARQGTGRGSCIHWT 523
P R N C +G KAH S RG C HWT
Sbjct: 3454 PCRRHNACRSGPKAHTSYSMYGRRGGCSHWT 3484
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 597 NTCSAGKAHHSARQGTGR-GSCIHWT 523
N C +G HS+ GR G C HWT
Sbjct: 1365 NECRSGPTAHSSYSAWGRRGGCSHWT 1390
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 597 NTCSAG-KAHHSARQGTGRGSCIHWT 523
N C +G KAH S RG C HWT
Sbjct: 3090 NACRSGPKAHTSYSMYGRRGGCSHWT 3115
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 246 MPKIIELTVEIEIQRVSCPGVWLCQDGRVSLSVYALGTSYQTCML 380
+P ++ L E E R++CP +WL +SV++ S C L
Sbjct: 1044 IPSVVWLVREDEQYRLTCPLMWLAASADSRVSVWSADWSKDFCEL 1088
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 28.7 bits (61), Expect = 5.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 565 SAPRYWARIVHSLDTQSSDHC 503
+APRYW ++ ++T+S++ C
Sbjct: 479 NAPRYWTKVSQLVETRSAEEC 499
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 597 NTCSAG-KAHHSARQGTGRGSCIHWT 523
N C +G KAH S RG C HWT
Sbjct: 29 NACRSGPKAHTSYSMYGRRGGCSHWT 54
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 597 NTCSAG-KAHHSARQGTGRGSCIHWT 523
N C +G KAH S RG C HWT
Sbjct: 1497 NECRSGPKAHTSYSMYGRRGGCSHWT 1522
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 597 NTCSAG-KAHHSARQGTGRGSCIHWT 523
N C +G KAH S RG C HWT
Sbjct: 1857 NECRSGPKAHTSYSMYGRRGGCSHWT 1882
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -2
Query: 604 SLEHMFGGKSTSFSAPRY---WARIVHSLDTQ--SSDHCTSSQ 491
S+ +GG TSF P Y A++ +S+DTQ SS SSQ
Sbjct: 286 SMSSPYGGSDTSFQLPNYANGKAQVRNSIDTQQVSSKETESSQ 328
>SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 288 RVSCP-GVWLCQDGRVSLSVYALGTSYQT 371
RV CP GVW CQ R ++ A S QT
Sbjct: 209 RVDCPPGVWTCQKKREEIAQQAEAASGQT 237
>SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 294 SCPGVWLCQDGRVSLSVYALGTSYQTCMLPPIFPLTFKDVFYFRKR 431
+CP + RV + + T+ T PP +PLT K V R+R
Sbjct: 100 ACPPAYPLTLTRVLVRRQRVATNLDTRACPPAYPLTLKRVLVRRQR 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,117,714
Number of Sequences: 59808
Number of extensions: 549383
Number of successful extensions: 1296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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