Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E11
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0795 - 31792231-31794780 32 0.30
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 31 0.53
07_01_0526 - 3913713-3913881,3914505-3914677 31 0.70
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 31 0.92
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170... 29 2.1
04_03_0904 + 20717005-20718087 29 2.8
12_02_0434 + 19025539-19026027,19026474-19027553 29 3.7
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 4.9
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 4.9
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 28 4.9
05_05_0173 + 22956927-22958615 28 6.5
11_06_0330 - 22401751-22402221 27 8.6
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 27 8.6
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 27 8.6
>02_05_0795 - 31792231-31794780
Length = 849
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 239 EGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAP 382
EG A+ ++G +GY A D P++ +A +P PT+ AP
Sbjct: 47 EGAAAAAGTIEGEAGYAAADADPMEDEAADEAGAAEPMEDDPPTSSAP 94
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 338 GYQPSGAHLPTTPAPLPIP 394
G+ P GAH P PAP P+P
Sbjct: 229 GFPPLGAHAPFQPAPTPVP 247
>07_01_0526 - 3913713-3913881,3914505-3914677
Length = 113
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 230 LVNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIAR 409
L EG +DA + Q S+ + G I + TA +GAH P IP Y R
Sbjct: 44 LAGEGWDDA-VEPQSSTSHIVLSGLRINLNLTAATADPAKTGAHDVRLAPPPYIPQYNER 102
Query: 410 AI-EYIRTH 433
+ EY R H
Sbjct: 103 SYHEYWREH 111
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 320 YTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 445
++A ++ P + +T APLP P + E++ HPP P
Sbjct: 46 HSASSSSSSPPPSSSASTAAPLPAPPTPSPVPEHLHHHPPPP 87
>04_01_0146 +
1701744-1701860,1702036-1702112,1702247-1702344,
1704073-1704228,1704671-1705290,1705397-1705458,
1705551-1705941,1706404-1706575,1706686-1707212
Length = 739
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 338 RWRQQCK*SEWEYHQGQCSRLNLGRRWMHPH 246
+W+ QC+ E + QC+R +G RW H
Sbjct: 169 KWKGQCQAGE-AFRSNQCNRKIIGARWYDKH 198
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 284 YTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIP 394
YT P TP TYT P PT PA P P
Sbjct: 73 YTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTP 109
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 326 ADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 448
ADA GY PT P P P+ + + H PKPE
Sbjct: 22 ADAGGYGGGYTPTPTPVKPAPKPEKPPKEHKPPHHHEPKPE 62
>12_02_0434 + 19025539-19026027,19026474-19027553
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 401 IARAIEYIRTHPPKPEVGQRI 463
++RAIEY+ THP +P + + I
Sbjct: 334 VSRAIEYLHTHPTRPVIHRDI 354
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 287 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI----PDYIARAIEYIRTHP 436
T+P+ +P +Y + Y PS A+ P++P P P+Y + Y T P
Sbjct: 1735 TSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTSP 1788
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 326 ADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 445
A + PS AH P P P P+ R + HPP P
Sbjct: 160 APTSAAPPSPAHAPELKKPPPPPEAHHRPTKSYTGHPPPP 199
>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
Length = 878
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 208 DSVAGLILVLVFVRENVSILRHNLGISFTSAHDVRNVSDGYRDQXRGRCKFSFR 47
D+ A + + + EN LRH + S+HDV S Y C+ FR
Sbjct: 516 DTTAEAMNESIALSENEKQLRHEKHYRYVSSHDVAYWSKSYIHDLERSCRDHFR 569
>05_05_0173 + 22956927-22958615
Length = 562
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 341 YQPSG--AHLPTTPAPLPIPDYI---ARAIEYIRTHPP 439
Y PS AH P P P+P P+ I A +E+ +HPP
Sbjct: 86 YDPSAPEAHPPYVPPPVPPPEAIPELADDLEFGFSHPP 123
>11_06_0330 - 22401751-22402221
Length = 156
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 365 PTTPAPLPIPDYIARAIEYIRTHPPKPE 448
P P+P DYIA + R PPKPE
Sbjct: 39 PAGKVPMP-DDYIATILSLKREPPPKPE 65
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 453 PTSGLGG*VLMYSMAR-AM*SGIGRGAGVVGRWAPEGWYP 337
P G GG L +A A G R VVG W PE W P
Sbjct: 48 PLPGAGGLPLFCQLAAVAACGGERRRLVVVGGWDPETWAP 87
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 263 RWMHPHGPRLRALLVPGH*FRCWSDIGTGICPGKRQHLAT 144
RW+H GP L + VPG +S++ TG+ P H T
Sbjct: 585 RWIHALGPSLGIVRVPGIGI-IYSELATGV-PAIFSHFVT 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,768,000
Number of Sequences: 37544
Number of extensions: 351929
Number of successful extensions: 1260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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