Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E08
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 33 0.17
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.39
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.69
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 1.6
12_01_0442 + 3495333-3496484 27 6.4
08_02_1289 - 25923916-25924586,25925148-25926630 27 6.4
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 6.4
09_04_0652 - 19227686-19227926,19229368-19232294 27 8.5
09_03_0203 + 13475118-13475447,13475529-13475660,13475924-134761... 27 8.5
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 27 8.5
01_01_0506 + 3701448-3701591,3702097-3702400,3702894-3703012,370... 27 8.5
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 32.7 bits (71), Expect = 0.17
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 65 KFFMIFVLALLAMANAQVLISNRNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGA 232
K ++F L L A A ++ +G P ++ + PP D P+ + Y+P +
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPD 70
Query: 233 YYVDRPQGRPYFKPTPFPGARGG 301
YY D P Y+ P P P GG
Sbjct: 71 YY-DPPPSPDYYDPPPSPYYGGG 92
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.39
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 140 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 289
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 0.69
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 140 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 298
Y P + P V PP Y P +G P N + Y + P GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -2
Query: 292 STRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAV---SVRD 122
S + R R+E + HV+ + + + + N R ++ + + D
Sbjct: 361 SAKFRERIEAKKEKCPAHVLQVIEEELTKLQLLEASSSEFNVTRNYLDWLTVLPWGNYSD 420
Query: 121 ENLSVGHSQQSEDENH 74
EN V H+QQ DE+H
Sbjct: 421 ENFDVHHAQQILDEDH 436
>12_01_0442 + 3495333-3496484
Length = 383
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 80 FVLALLAMANAQVLISNRNGYEPIDNRP 163
+VLAL AMA+ VLI++ + P+ RP
Sbjct: 21 YVLALPAMASLAVLIAHLDAAVPVPRRP 48
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 412 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 263
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 226 RCILRGPSPR-PTLLQAYPFPWCSRW 300
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 98 AMANAQVLISNRNGYEPID----NRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPY 265
A++ QVL S +G PID ++P I+ P K++ N + + + P
Sbjct: 523 ALSKEQVLGSEHSGENPIDDATSSQPVILLPYKEFGSTANEMDGTTENSQKPEDAVAPPA 582
Query: 266 FKPTPFPGAR 295
P P A+
Sbjct: 583 VSPLPEDNAQ 592
>09_03_0203 +
13475118-13475447,13475529-13475660,13475924-13476119,
13476281-13476385,13476726-13476803,13477269-13477346,
13477655-13477983
Length = 415
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 52 SYKNEILHDFRPRSAGYGQRSS----SHLEPKRLR 144
S++ E++ FRP +A YG SS S L P LR
Sbjct: 308 SFRPELMSGFRPYTASYGDISSFGGGSSLVPNELR 342
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 92 LLAMANAQVLISNRNGYEPIDN 157
L+ N + I NRNGY P+D+
Sbjct: 782 LMGCKNVSLSIRNRNGYTPLDH 803
>01_01_0506 +
3701448-3701591,3702097-3702400,3702894-3703012,
3703118-3703723
Length = 390
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTL 197
T++ R+ETAT + T + S LP TTL
Sbjct: 350 TMERKRRSETATAMATATQASQALPVKTTL 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,554
Number of Sequences: 37544
Number of extensions: 249760
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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