Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E08
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 32 0.23
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 31 0.40
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 31 0.53
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 31 0.53
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 30 0.93
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 30 0.93
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 30 0.93
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 30 1.2
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 29 2.2
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 29 2.2
SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 2.8
SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9) 29 2.8
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7) 28 5.0
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 28 5.0
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 27 8.7
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 8.7
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 102 WPTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLST 224
W T S+ T T T TT T+ KTTT T T ++T
Sbjct: 53 WTTTTTSTITTTTTTTTTTKTTTTTTTKTTTTTATTTEITT 93
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 269
T+ + T TA N TT T+ TTT T +TT + T T P TS
Sbjct: 99 TITTYTATVTAPNATTTTPTATTTTTTTTTTTTPYATTTTPNTTTTTPNTTTTS 152
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 138 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 269
AT +TT ++ P TT TAT +TT T T P A T+
Sbjct: 96 ATATITTYTATVTAPNATTTTPTATTTTTTT-TTTTTPYATTTT 138
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 108 TLKFSSRTETATN-LLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 284
T S+ T T T +++T T+ TTT+ T T +TT+ IT T+ T + ++
Sbjct: 119 TTTISTTTTTITAVIISTTTTTTSTANTTTITATITTTTTTITITATITTITTTITATIT 178
Query: 285 LVLA 296
++
Sbjct: 179 TTIS 182
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 287
T ++ T T T +TT T++ + T T + T + T I+ T P T S ++
Sbjct: 139 TTTSTANTTTITATITTTTTTITITATITTITTTITATITTTISTTTPFITATISTTITT 198
Query: 288 VL 293
+
Sbjct: 199 TI 200
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 275
T ++ T +T + TT T+ I TTT+ TA +STT T T +T+++
Sbjct: 100 TTTTTTTTTISTTISTTTTTTTISTTTTTI--TAVIISTTTTTTSTANTTTITATI 153
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 126 RTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAV 299
+ + + N TT T+ TTT + T T +TT+ T + T S + + AV
Sbjct: 75 KIDGSQNGTTTTTTTFSATTTTTTITTTTTTTTTISTTISTTTTTTTISTTTTTITAV 132
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
T T ++T + T I+ TTT+ T T ++TT+ T T +T+++ +++
Sbjct: 15 TNATTTIITLSTT--IITTTTTITTTTTTITTTITPTITTTTTIITTTITTTII 66
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 111 LKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHIT 239
+ S+ T T +TT T++ T T+ T T ++TT+ T
Sbjct: 22 ITLSTTIITTTTTITTTTTTITTTITPTITTTTTIITTTITTT 64
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 153 TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSS 272
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 229 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 267
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 105 PTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSS 272
P +S T A T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 761 PETTAASETTVAPET-TDAPATTLAPKTTTALETTVAAKTTV-VPETTPALETTSA 814
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 153 TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSS 272
T A + + PKTTT +ET TTV + T P + TS+
Sbjct: 2291 TDAPATTLAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 153 TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLP 278
T A + +P+TTT +ET T L TV A T+ P
Sbjct: 2663 TDAPVTTFVPETTTALETTTALEITVEPETKTTAAPETTVAP 2704
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 123 SRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVG 302
S+T AT L+T+ T +T+ + T LST+ T P T + + V A
Sbjct: 453 SQTTKATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTKATTSTAVEATT 512
Query: 303 S 305
S
Sbjct: 513 S 513
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 30.3 bits (65), Expect = 0.93
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 141 TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAV 299
TN++TT+ T++I T T+ T T ++ T+ IT T+ +T ++ +++ + +
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI-TITITITITITITITI 218
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 30.3 bits (65), Expect = 0.93
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSKE 311
T +L TTA + P+TTT + T +TT + T P+A T+SL + LA + E
Sbjct: 566 TTASLATTAPEATTAPETTTALLVTTAPETTTASLVTTAPEA-TTASLATTASLATTAPE 624
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 275
T +L+TTA + P+TTT E T TT T T+SL
Sbjct: 139 TTASLVTTAPEATTAPETTTAPEATTAPETTTASLVTTAPETTTASL 185
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTL-METATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSKE 311
T +L TTA + P+TTT + T +TT + T P+A T+SL + A + E
Sbjct: 524 TTASLATTAPETTTAPETTTASLATTAPETTTASLVTTAPEA-TTASLATTAPEATTAPE 582
Query: 312 YLRKLI 329
L+
Sbjct: 583 TTTALL 588
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 153 TTARTSLILPKTTTL-METATNLSTTVHITWTVPKADLTSSL 275
TTA + PKTTT + T +TT + T P+A S L
Sbjct: 638 TTASLATTAPKTTTASLATTAPEATTASLVTTAPEATTASLL 679
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 30.3 bits (65), Expect = 0.93
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETA-TNLSTTVHITWTVPKADLTSSLPLSLVL 293
T+TAT+ T TS +L +T L+ T T+ +T+ H+T LTS+ ++ V+
Sbjct: 436 TDTATS--TAVVTSTVLVASTRLLSTVKTHTATSTHVTTATSTDTLTSTAIVTSVM 489
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 245
T T T TT T+ I TTT T TN +TTV+ T T
Sbjct: 543 TITITTNYTTTVTTTITNYTTTFTITITNYTTTVNTTIT 581
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSK 308
T T T TT T+ TTT TAT + T+ IT TV ++ +S+++ +K
Sbjct: 46 TTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITIT-TVTITTAVANKTVSIMIDKNNK 104
Query: 309 E 311
+
Sbjct: 105 K 105
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 287
T+K + T + TT T+ TTT T T +TT T T +T+ +++
Sbjct: 30 TIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITITT---VTI 86
Query: 288 VLAVGSK 308
AV +K
Sbjct: 87 TTAVANK 93
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSK 308
T T T TT T+ TTT TAT + T+ IT TV ++ +S+++ +K
Sbjct: 168 TTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITIT-TVTITTAVANKTVSIMIDKNNK 226
Query: 309 E 311
+
Sbjct: 227 K 227
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 287
T+K + T + TT T+ TTT T T +TT T T +T+ +++
Sbjct: 152 TIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKTITITT---VTI 208
Query: 288 VLAVGSK 308
AV +K
Sbjct: 209 TTAVANK 215
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTVPKADLTSSLPL 281
T T ++TT T+ I+ T T T T ++TTV IT T+ +T++ P+
Sbjct: 1082 TTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTIITTTDPI 1135
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVH---ITWTVPKADLTSSLPLSLV 290
T T ++TT T+ I+ T T T ++TT+ IT TV +T+++ +++
Sbjct: 1073 TTINTTIITTTITTTIITTTITTTIITTTITTTITTTIITTTVTTTIITTTITTTII 1129
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETA--TNLSTTVHITWTVPKADLTSSLPLSLVLAV 299
T T T L T L L TTL+ T + V IT T+P +T++LPL ++ +
Sbjct: 539 TITTTLPLVVITTILPLVTITTLLPLVVITTILPLVVITTTLPLVAITTTLPLVIITTI 597
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 105 PTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 245
PT+ ++ T T ++TT + I+ T T++ T T + + T T
Sbjct: 493 PTISINTTTTVTTTIITTTIITTIIITTATIITTTTIIINVIIATTT 539
>SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 120 SSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVL 293
++ T T T +TT T++ + T T + T + T I+ T P T S ++ +
Sbjct: 2 TANTTTITATITTTTTTITITATITTITTTITATITTTISTTTPFITATISTTITTTI 59
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 245
T+ ++ T T T +TT T++ TTT+ T ++ T+ T T
Sbjct: 11 TITTTTTTITITATITTITTTITATITTTISTTTPFITATISTTIT 56
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 93 CWLWPTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLST-TVHITWTVPKADL 263
C T ++ T TAT TTA T+ TTT T TN +T T I W D+
Sbjct: 520 CSCTATTATATTTATATTTATTAATA-----TTTTTTTTTNTTTNTTIIIWIAAVTDV 572
>SB_42229| Best HMM Match : Na_H_Exchanger (HMM E-Value=3.9)
Length = 678
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 135 TATNLLTTART-SLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAV 299
T +L+T T L++ T L+ T + V IT T+P +T+ LPL ++ +
Sbjct: 278 TILHLVTITTTLPLVVITTILLLVVITTILPLVAITTTLPLVAITTILPLVVITTI 333
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 269
T ++ T T T TTA + TTT T T +TT T T T+
Sbjct: 10 TTTTTTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKAD 260
T ++ TAT TA T+ TTT T T +TT T T D
Sbjct: 17 TTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTKNND 67
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 284
TATN TA +PKTTT ET TTV T D S+ +S
Sbjct: 357 TATN---TAPDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTIS 403
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 284
T + T T T+ L TTL+ T +L+T + T P+A +T + ++
Sbjct: 728 TPSLTTQTTLIATTPSLTTQTTLIATTPSLTTQTTLIATTPEASITQTTTIA 779
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 275
T +S T+T+T+ T+ L TTL+ T +L+T + T P ++L
Sbjct: 682 TPPIASTTDTSTSQTPPIATTPSLTTQTTLIATTPSLTTQTTLIATTPSLTTQTTL 737
>SB_40768| Best HMM Match : TM_helix (HMM E-Value=7.7)
Length = 122
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = +3
Query: 108 TLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 287
T+ ++ T T ++TT T++ + TT + T + TTV I T+ + +++ ++
Sbjct: 16 TVIITTMITTITVIITTMITTITITTTTIITTMITTIITTVIIIITITIITIITTIITTI 75
Query: 288 VLAV 299
+ +
Sbjct: 76 ITTI 79
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 129 TETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 269
T T ++TT T++I+ T T++ T + TT+ T T+ +T+
Sbjct: 42 TTIITTMITTIITTVIIIITITIITIITTIITTIITTITIITTIITT 88
>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = -2
Query: 274 RLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVR 125
R+ +R + +V V V+ R+VA S+RVV+ + VR V+ R+VA SVR
Sbjct: 819 RVVMRRYVASVRV---VMRRYVA-SVRVVMRRYVTSVRVVMRRYVA-SVR 863
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -2
Query: 226 VVDRFVAV-SIRVVVFGRINDVRAVVNRFVAVSVR 125
V+ R+VA+ S+RVV+ + VR V+ R+VA SVR
Sbjct: 808 VMRRYVAIASVRVVMRRYVASVRVVMRRYVA-SVR 841
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 226 VVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVR 125
V+ R+VA S+RVV+ + VR V+ R+VA SVR
Sbjct: 764 VMRRYVA-SVRVVMRRYVTSVRVVMRRYVA-SVR 795
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -2
Query: 226 VVDRFVAVSIRVVVFGRINDVRAVVNRFVAV-SVR 125
V+ R+VA S+RVV+ + VR V+ R+VA+ SVR
Sbjct: 786 VMRRYVA-SVRVVMPRYVASVRVVMRRYVAIASVR 819
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 129 TETATNLL---TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 269
T ATN TTA T+ P TTT T T L+TT T T T+
Sbjct: 4 TAPATNTAPATTTAPTTATAPTTTTAPTTNTALTTTTAPTTTTAPTTTTA 53
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +3
Query: 105 PTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSS 272
PT + T TA TTA T+ P TTT T T +TT T P D +S
Sbjct: 24 PTTTTAPTTNTALTT-TTAPTTTTAPTTTTAPTTTTAPTTT-----TTPNNDYNTS 73
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 193 P*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNILEN 324
P + L T + CI R +PT + P PW +++N+ ++
Sbjct: 560 PRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQD 603
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 132 ETATNLLTTART-SLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLP 278
ET TTA + LPKTT + ET TT T + DLT LP
Sbjct: 229 ETIAKPETTAPPETTALPKTTAVPETTAAPETTAKPETTDLRVDLTIFLP 278
>SB_27578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 161 PYIVNPPKDY--NPNGNGYEPIDNGAYYVDRPQG 256
P+ ++P Y +PNG Y NG YV P G
Sbjct: 8 PFSISPGVQYVFHPNGVQYVTQPNGVQYVTHPNG 41
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 164 YIVNPPKDY--NPNGNGYEPIDNGAYYVDRPQGRPY 265
Y+ +P Y +PNG Y NG +V P G Y
Sbjct: 116 YVTHPNAQYVAHPNGAQYVTHPNGVQFVTHPNGVQY 151
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 105 PTLKFSSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVH--ITWTVPKADLTSSLP 278
P L T + ++TT + +I TT+ + T L+TT+ I +P TS P
Sbjct: 10 PALIIKDPITTISQIITTL-SRIITDPITTISQIITTLATTISQIIRTPLPIITTTSRTP 68
Query: 279 LSLV 290
L ++
Sbjct: 69 LRII 72
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 122 ISNRNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYYVDRPQGRPYFKPTPFPGAR 295
IS + GY P R Y ++P + Y P GY P G+ Y P G Y P R
Sbjct: 1324 ISPQRGYGPAF-RGYAISPQRGYGPAFRGYAISPRQRGSGYA-IPLG-IYVPPRSRQNGR 1380
Query: 296 GGK 304
G K
Sbjct: 1381 GRK 1383
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 140 YEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDRPQGRPYFKPTPFP 286
Y P N PY P Y P N Y P N Y + P P + P P P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTV 248
T TN++TTA T+ +T+ T T +T + I T+
Sbjct: 297 TNTNIITTATTTTTSTTISTITVTITTTTTIIIIVITI 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,801,544
Number of Sequences: 59808
Number of extensions: 275828
Number of successful extensions: 1437
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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