Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E08
(500 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellu... 31 1.7
U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardat... 31 2.3
L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retard... 31 2.3
BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein. 31 2.3
AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein. 31 2.3
AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retarda... 31 2.3
AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein. 31 2.3
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 30 3.9
CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein. 30 5.2
BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein. 30 5.2
U91329-1|AAC52117.1| 1103|Homo sapiens kinesin-like motor protei... 29 6.9
BC034993-1|AAH34993.1| 1103|Homo sapiens kinesin family member 1... 29 6.9
AB051475-1|BAB21779.1| 1094|Homo sapiens KIAA1688 protein protein. 29 6.9
AB014606-1|BAA31681.2| 1123|Homo sapiens KIAA0706 protein protein. 29 6.9
BX537728-1|CAD97821.1| 609|Homo sapiens hypothetical protein pr... 29 9.1
AY048121-1|AAK85703.1| 659|Homo sapiens RAS guanyl releasing pr... 29 9.1
AY048119-1|AAK85701.1| 673|Homo sapiens RAS guanyl releasing pr... 29 9.1
AB095938-1|BAC23114.1| 1685|Homo sapiens KIAA2018 protein protein. 29 9.1
>AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellular
receptor 1 protein.
Length = 359
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP---KADLTSSLP 278
T +TT RTS +P TTT+ T + ++ T TVP T+S+P
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSVP 186
Score = 31.5 bits (68), Expect = 1.7
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 108 TLKFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 284
T++ S+ T T + TT T++ +P TTT+ T T +STT + T T+S+P++
Sbjct: 143 TVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMT-VSTTTSVP-TTTSIPTTTSVPVT 200
Query: 285 LVLA 296
++
Sbjct: 201 TTVS 204
>U48436-1|AAC82513.1| 1311|Homo sapiens fragile X mental retardation
protein FMR2p protein.
Length = 1311
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 978 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 1035
>L76569-1|AAA99416.1| 1276|Homo sapiens fragile X E mental retardation
syndrome protein protein.
Length = 1276
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 943 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 1000
>BC132683-1|AAI32684.1| 1301|Homo sapiens AFF2 protein protein.
Length = 1301
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 968 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 1025
>AJ001550-1|CAA04822.1| 1272|Homo sapiens FMR2 protein protein.
Length = 1272
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 939 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 996
>AF012624-1|AAB71534.1| 1311|Homo sapiens familial mental retardation
protein 2 protein.
Length = 1311
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 978 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 1035
>AB102644-1|BAC81113.1| 1272|Homo sapiens FMR2 protein.
Length = 1272
Score = 31.1 bits (67), Expect = 2.3
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 KFSSRTETATNL-LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLV 290
K SS T T TN + TA + TTT+ TAT +TT T T+ + +TS++ L+
Sbjct: 939 KASSATITVTNTAIATATVTATAIVTTTVTATATATATTTTTTTTI--STITSTITTGLM 996
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 30.3 bits (65), Expect = 3.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 120 SSRTETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLT 266
+S T T+ L+T++ P+T T M TN +T+ T PK + T
Sbjct: 419 TSLAPTLTSELSTSQAETSTPRTETTMSPLTNTTTSQGTTRCQPKCEWT 467
>CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein.
Length = 364
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 251
T +TT RTS +P TTT+ T T +TTV T ++P
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPMT-TVPTTTVPTTMSIP 173
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 153 TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 296
TT T++ +P TTT++ T T +STT + T T+S+P++ ++
Sbjct: 164 TTVPTTMSIPTTTTVLTTMT-VSTTTSVP-TTTSIPTTTSVPVTTTVS 209
>BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein.
Length = 364
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 135 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 251
T +TT RTS +P TTT+ T T +TTV T ++P
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPMT-TVPTTTVPTTMSIP 173
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 153 TTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLA 296
TT T++ +P TTT++ T T +STT + T T+S+P++ ++
Sbjct: 164 TTVPTTMSIPTTTTVLTTMT-VSTTTSVP-TTTSIPTTTSVPVTTTVS 209
>U91329-1|AAC52117.1| 1103|Homo sapiens kinesin-like motor protein
KIF1C protein.
Length = 1103
Score = 29.5 bits (63), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 82 RPRSAGYGQRSSSHLEPKRLRTY*QPP 162
R R AG Q H +PK+ +Y QPP
Sbjct: 1039 RSRGAGSAQPEPQHFQPKKHNSYPQPP 1065
>BC034993-1|AAH34993.1| 1103|Homo sapiens kinesin family member 1C
protein.
Length = 1103
Score = 29.5 bits (63), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 82 RPRSAGYGQRSSSHLEPKRLRTY*QPP 162
R R AG Q H +PK+ +Y QPP
Sbjct: 1039 RSRGAGSAQPEPQHFQPKKHNSYPQPP 1065
>AB051475-1|BAB21779.1| 1094|Homo sapiens KIAA1688 protein protein.
Length = 1094
Score = 29.5 bits (63), Expect = 6.9
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +2
Query: 125 SNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPID-----NGAYYVDRPQGRPYFKPTPF 283
S R GYEP P PP +Y P+D G Y PQ P KP PF
Sbjct: 314 SPRYGYEP----PLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPGRKPRPF 367
>AB014606-1|BAA31681.2| 1123|Homo sapiens KIAA0706 protein protein.
Length = 1123
Score = 29.5 bits (63), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 82 RPRSAGYGQRSSSHLEPKRLRTY*QPP 162
R R AG Q H +PK+ +Y QPP
Sbjct: 1059 RSRGAGSAQPEPQHFQPKKHNSYPQPP 1085
>BX537728-1|CAD97821.1| 609|Homo sapiens hypothetical protein
protein.
Length = 609
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 83 VLALLAMANAQVLISNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDN 226
V +L +M + IS G PID + + PP P GNG D+
Sbjct: 128 VSSLRSMQSQAFRISQNTGPPPIDRQKRLSYPPVQSIPTGNGIPSRDS 175
>AY048121-1|AAK85703.1| 659|Homo sapiens RAS guanyl releasing
protein 4 variant 2 protein.
Length = 659
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 213 NLSTTVHITWTVPKADLTSSLPLSLVLAVGSKEYLRKLI 329
N+ +H +W +P ADL + L S A G + LR+L+
Sbjct: 83 NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120
>AY048119-1|AAK85701.1| 673|Homo sapiens RAS guanyl releasing
protein 4 protein.
Length = 673
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 213 NLSTTVHITWTVPKADLTSSLPLSLVLAVGSKEYLRKLI 329
N+ +H +W +P ADL + L S A G + LR+L+
Sbjct: 83 NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120
>AB095938-1|BAC23114.1| 1685|Homo sapiens KIAA2018 protein protein.
Length = 1685
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 83 VLALLAMANAQVLISNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDN 226
V +L +M + IS G PID + + PP P GNG D+
Sbjct: 1204 VSSLRSMQSQAFRISQNTGPPPIDRQKRLSYPPVQSIPTGNGIPSRDS 1251
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,811,764
Number of Sequences: 237096
Number of extensions: 1420376
Number of successful extensions: 10734
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10732
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -