Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E08
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +3

Query: 150 LTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 284
           +TT  T+     TTT   T  N +     T   P+ D      LS
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELS 702


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 229  CILRGPSPRPTLLQA 273
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 244 PSPRPTLLQAYPFPWCSRWEVKNILE 321
           P P+P L + YP    ++ ++  IL+
Sbjct: 31  PRPKPLLKKEYPLVMDTKLKIIEILQ 56


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +2

Query: 119 LISNRNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 280
           +IS+ +     +N  Y  N   +YN N N Y       Y ++  +  P   P P
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVP 134


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 191 NPNGNGYEPIDNGAYYVDRP 250
           N  GN  +  D+GA   DRP
Sbjct: 254 NAAGNNEDSSDSGAAASDRP 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,297
Number of Sequences: 438
Number of extensions: 3081
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)