Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E08
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    28   3.1  
At1g72110.1 68414.m08335 expressed protein                             28   3.1  
At5g51490.1 68418.m06386 pectinesterase family protein contains ...    28   4.1  
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   4.1  
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ...    27   5.4  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   7.1  
At3g50370.1 68416.m05508 expressed protein                             27   9.4  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    27   9.4  

>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 125 SNRNGYEPIDNRPYIV-NPPKDYNPNGNGYEPIDNGAYYVDRPQ 253
           +N N + P  N PY   +PP    P  NGY    N  Y V  PQ
Sbjct: 12  NNNNHHHPHHNPPYYYSDPPPQQPPPQNGYSYSHN--YPVSTPQ 53


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 374 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 279
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 71  FMIFVLALLAMANAQVLISNRNGYEPIDNRPYIVNPPKDYNPNGNGYE 214
           F+  +L +L   +    +++RN  +  D  PY  +P K Y  N NG++
Sbjct: 12  FLHLILLVLLCVHPLTTVADRNSTDWCDKTPY-PDPCKCYFKNHNGFQ 58


>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 505

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -2

Query: 274 RLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVRDENLSVGHSQ 95
           ++ VRS  G V ++    DRF++      + G  + +   + +FVA S +   L+V    
Sbjct: 77  KMVVRSKAGAVPLM-KHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHL 135

Query: 94  QSEDENHEEFHFYMITSY 41
            S+  +H    F+ ++ Y
Sbjct: 136 LSDQTSHPHLSFFALSLY 153


>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 504

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -2

Query: 274 RLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAVSVRDENLSVGHSQ 95
           ++ VRS  G V ++    DRF++      + G  + +   + +FVA S +   L+V    
Sbjct: 76  KMVVRSKAGAVPLM-KHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHL 134

Query: 94  QSEDENHEEFHFYMITSY 41
            S+  +H    F+ ++ Y
Sbjct: 135 LSDQTSHPHLSFFALSLY 152


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 176 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 286
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 286

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +2

Query: 179 PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFK----PTPFPGARGG 301
           P+ Y P G GY+P  N  YY     G P  +    P  +P   GG
Sbjct: 154 PEPYPPQGGGYQP-QNQNYYPYMNSGSPKTESIGHPETYPPQGGG 197


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +2

Query: 173 NPPKDYN---PNGNGYEPIDNGAYYVDRPQGRP--YFKPTPFPGARG 298
           +PP +Y    P G    P ++  Y    P   P  Y++ TP P  RG
Sbjct: 766 SPPPEYQSPPPKGCNDSPSNDHHYQTPTPPSLPPPYYEDTPLPPIRG 812


>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 161 PYIVNPPKDY-NPNGNGYEPIDNGAYYVDRPQGRP 262
           PY   P K Y NP G+ Y P     Y V +P+  P
Sbjct: 761 PYSPYPEKLYQNPEGDDYYPFGRPRYSVRQPRVLP 795


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 70  LHDFRPRSAGYGQRSSSHLE 129
           +H+ RP++A YG RS  H E
Sbjct: 386 IHESRPKTAVYGGRSPDHRE 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,946,346
Number of Sequences: 28952
Number of extensions: 199750
Number of successful extensions: 545
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)