Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E07
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 718 PXFEPLV-RHEIHSTGWCISQYGSNTS 641
           P   PL  +HE +S  W  + +G NTS
Sbjct: 270 PSASPLAYQHEYNSFNWTANGHGHNTS 296


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
 Frame = -2

Query: 522 SPGAIMDVVNIPENAPAA-----KSSAFVRTCSSSFFMSFLPRPKPKKLMANIGATPVRG 358
           SP    ++   PE AP A     +  +   + +S   M+  P P     +A I       
Sbjct: 79  SPEPDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPITTDNVAAISGVLRSL 138

Query: 357 ADMPL*SPRKPSF*TVFLKQSQVPAYRATSPGFGR--GIVCNRTLIVSI 217
            D PL +P +PSF     +Q+ V   RA    +GR  G+   R L V++
Sbjct: 139 LDRPLPAPERPSF-EGLKRQNPVKFLRAIEE-YGRFFGLDSQRLLGVAM 185


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 493 IYDVHNGARRTYQMFITNTTGW*CSSKI 576
           +Y +H G    +  F  N  G  CS K+
Sbjct: 485 LYTIHMGYHGFHNPFTCNMCGVECSDKV 512


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 243 KLC-PFQNRARSLCTLAPGIVSRKPFKRKASADS 341
           K C PF+   +   TLA G+VS +   +K S+++
Sbjct: 66  KSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEA 99


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 407 GLGKKLIKNDEEQVLTKAELFAAGAF 484
           G+ +  I+ND+E     AEL   G F
Sbjct: 386 GMYQCFIRNDQESAEATAELKLGGRF 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,102
Number of Sequences: 336
Number of extensions: 4503
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)