Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E06
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.3  
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    29   2.3  
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   3.0  
At3g13060.2 68416.m01628 expressed protein contains Pfam profile...    29   4.0  
At3g13060.1 68416.m01627 expressed protein contains Pfam profile...    29   4.0  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    29   4.0  
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon...    28   5.2  
At5g28120.1 68418.m03396 hypothetical protein                          27   9.2  
At5g28110.1 68418.m03395 hypothetical protein                          27   9.2  
At5g18510.1 68418.m02185 hypothetical protein                          27   9.2  

>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Rattus norvegicus [GI:474940], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 267

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 297 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 440
           H  L +  C YLI  A+P    +T  ++KT   T S  RT S   L R
Sbjct: 91  HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138


>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 260 GMAAFMYR-QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 424
           G   FM + Q +  Q   TGQ YI      TL  T+Y     N VYY + P+  PI+
Sbjct: 317 GYPPFMNQAQQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371


>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Gallus gallus [GI:212530], Rattus
           norvegicus [GI:474940], Mus musculus [SP|Q60715];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 287

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 297 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 440
           H  L +  C YLI  A+P  + +T  + +T     S  RT S   L+R
Sbjct: 89  HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136


>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 634

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = +2

Query: 152 YGNVDSLSYGS--GDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVY 325
           Y NV+ L   S  G +    LV    Y   YNP+   G  +      P A+  PS GQ+Y
Sbjct: 100 YVNVEGLDITSPVGFNENASLVYQTGYG--YNPQMPYGPYS------PAASPLPSEGQLY 151

Query: 326 IPDRRRQTLADTSY---VPQQENEVYYPQQPE 412
            P +   + A   Y   VP     +  P QPE
Sbjct: 152 SPQQFPFSGASPYYQQVVPPSMQYITSPTQPE 183


>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 551

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = +2

Query: 152 YGNVDSLSYGS--GDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVY 325
           Y NV+ L   S  G +    LV    Y   YNP+   G  +      P A+  PS GQ+Y
Sbjct: 100 YVNVEGLDITSPVGFNENASLVYQTGYG--YNPQMPYGPYS------PAASPLPSEGQLY 151

Query: 326 IPDRRRQTLADTSY---VPQQENEVYYPQQPE 412
            P +   + A   Y   VP     +  P QPE
Sbjct: 152 SPQQFPFSGASPYYQQVVPPSMQYITSPTQPE 183


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +2

Query: 140 YNPYYGNVDSLSYGSGDSNRGGLVMSRYYN----PYYNPRAVGGGMAAFMYRQPEAAQAP 307
           Y PY G+     YG G +  G      Y N    PY NP   G G  +   R    AQAP
Sbjct: 238 YPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGP-RSSWGAQAP 296

Query: 308 S 310
           S
Sbjct: 297 S 297


>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
           family protein / Gpi1 family protein similar to
           SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
           biosynthetic protein gpi1 {Schizosaccharomyces pombe};
           contains Pfam profile PF05024: N-acetylglucosaminyl
           transferase component (Gpi1)
          Length = 560

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 390 SITLSNQRTRSSAPLKRPNWLTPL 461
           S++ SN   ++ APLK+P W+  L
Sbjct: 49  SLSFSNSSPQTKAPLKKPKWVDDL 72


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 149 YYGNVDSLSYGSGDSNRGGLVMSR 220
           Y GN+D + +G GD ++  L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 149 YYGNVDSLSYGSGDSNRGGLVMSR 220
           Y GN+D + +G GD ++  L+ SR
Sbjct: 122 YVGNIDRVRWGPGDKDQKTLIKSR 145


>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 413 NPIFSPTQATELADPTEKIE 472
           +P+FSP + +E+ D  EK+E
Sbjct: 137 SPVFSPLECSEMRDSAEKLE 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,678
Number of Sequences: 28952
Number of extensions: 292607
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)