Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E05
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   31   1.1  
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 30   2.5  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2)              29   4.4  
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)                    29   5.8  
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)           28   7.7  

>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 300 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 169
           GSIF D    VS   NH L + R + L  C+ER++G     D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 223 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 348
           Q+ D MYEV+I       + +RK+ R+  D  E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 540 CSCYRCSRWHFDFPGACGTPACADSDVVNWERFRIRPGYEW 418
           C C R +   FD  GAC T  C +  + + E F + PGY W
Sbjct: 346 CFC-RKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 217 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 354
           GP +   +    +G W    S  R  +T  P KV +  PGI NG  Y
Sbjct: 84  GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130


>SB_25668| Best HMM Match : Sigma70_r1_1 (HMM E-Value=1.2)
          Length = 449

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +2

Query: 422 SYPGLIRNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCTQHPLATLEATEETYPLRL 601
           SY G  + + +FT +E+  +       + + H   + + + TQHPLA     EE+ P  +
Sbjct: 112 SYDGK-QEMKKFTKTEAVYSKALPLQQQRREHVEDI-EFNLTQHPLALFPHLEESLPPDV 169

Query: 602 EEPVYGLMFQEV 637
            E V G++  E+
Sbjct: 170 FEDVVGVLDPEM 181



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +2

Query: 422 SYPGLIRNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCTQHPLATLEATEETYPLRL 601
           SY G  + + +FT +E+  +       + + H   + + + TQHPLA     EE+ P  +
Sbjct: 298 SYDGK-QEMKKFTKTEAVYSKALPLQQQRREHVEDI-EFNLTQHPLALFPHLEESLPPDV 355

Query: 602 EEPVYGLMFQEV 637
            E V G++  E+
Sbjct: 356 FEDVVGVLDPEM 367


>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 157 SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 315
           SGSV + V  A  +H  L    + + P+Y + +          G    V+R    +P+K 
Sbjct: 84  SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143

Query: 316 EIESPGILNG 345
              SPG L G
Sbjct: 144 PENSPGTLTG 153


>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 313 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 465
           + I + GI +  +   FWV + S  +  G     I    W+DP+P  V YY+
Sbjct: 1   LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,858,221
Number of Sequences: 59808
Number of extensions: 536245
Number of successful extensions: 1631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)