Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E05
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    32   0.51 
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    32   0.51 
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    30   2.1  
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put...    29   2.7  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   4.8  
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas...    29   4.8  
At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family...    28   8.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   8.3  

>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
 Frame = +1

Query: 109 DVATDDNLQYQFFPVSSGSVQFKVRAANDAHIAL--TTGPQ------ESDPMYEVMIGGW 264
           + A  D+L+++      G V F   A ND  +      G Q      ++ P Y V+IG  
Sbjct: 16  ECAWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSN 73

Query: 265 GNAKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----IS 429
            N +  I+ +      V+ E+  +     E++ +W+    G+IS G+     PF      
Sbjct: 74  RNRRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFK 129

Query: 430 WSDPEP-FPVYYVGVCTGW 483
           W DP+P   V YVG+ + W
Sbjct: 130 WQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
 Frame = +1

Query: 109 DVATDDNLQYQFFPVSSGSVQFKVRAANDAHIAL--TTGPQ------ESDPMYEVMIGGW 264
           + A  D+L+++      G V F   A ND  +      G Q      ++ P Y V+IG  
Sbjct: 16  ECAWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSN 73

Query: 265 GNAKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----IS 429
            N +  I+ +      V+ E+  +     E++ +W+    G+IS G+     PF      
Sbjct: 74  RNRRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFK 129

Query: 430 WSDPEP-FPVYYVGVCTGW 483
           W DP+P   V YVG+ + W
Sbjct: 130 WQDPKPNCNVQYVGL-SSW 147


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 748 EKERVXQGS--WHLREQHEPHTEALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLR 575
           E++R   G   + L EQ EP + A ++  +L   + EVL LL+     +   TE +  LR
Sbjct: 587 EQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLR 646

Query: 574 SLQGSQ 557
           S+   Q
Sbjct: 647 SVAQQQ 652


>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 851

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 232 DPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAG 399
           D  ++  +  +G ++S   +  T+ D V   +PG L+   YR  W+   S + S G
Sbjct: 675 DEHFQAKLADFGLSRSFPLEGETRVDTVVAGTPGYLDPEYYRTNWLNEKSDVYSFG 730


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 452 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 327
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
           / asparagine-tRNA ligase 2 (SYNC2) nearly identical to
           SP|Q9SW95; HMM hit: tRNA synthetases class II
          Length = 638

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 247 VMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 351
           V+IGGW  +   ++KN   P    + +P   +GG+
Sbjct: 50  VVIGGWVKSARAVKKNSPPPPLPVVAAPSPSSGGD 84


>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 611

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +1

Query: 223 QESDPMYEVMIGGWGNAKSVIRKNRTK--PDKVEIESPGILNGGEYRGFWVRWDSGIISA 396
           Q +D  + +  GG  N   V   N       K  +  P +  G ++    V W SG    
Sbjct: 135 QRADFSFALFTGGLSNPTLVSVSNHVSFINPKAPVY-PRLALGKKWDEMTVTWTSGY--- 190

Query: 397 GREGEAIPFISWS 435
              GEA+PF+ WS
Sbjct: 191 -NIGEAVPFVEWS 202


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 398 PAEIMPLSQRTQKPRYSPPLRIP 330
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,380
Number of Sequences: 28952
Number of extensions: 375286
Number of successful extensions: 1221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)