Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E04
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 31 3.5
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 31 3.5
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 31 3.5
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 31 3.5
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 31 3.5
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 31 3.5
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 31 3.5
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 30 8.1
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 8.1
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 8.1
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 555 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 606
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 607 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 650
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 555 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 606
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 607 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 650
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 555 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 606
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 607 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 650
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 555 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 606
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 607 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 650
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 555 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 606
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 607 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 650
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 532 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 583
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 584 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 627
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 31.5 bits (68), Expect = 3.5
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +2
Query: 86 LKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHS-SRVDYNKGAVKSIIVDENAKYR 262
L E + WP + + + +G + Y V HS S +D N G K+I+ DE +
Sbjct: 567 LVTENIQWPN-----GITLDLLSGRL--YWVDSKLHSISSIDVNGGNRKTILEDEK-RLA 618
Query: 263 YGVSYEIHPE----TDDGEDAIFKCNVMLGSEDNIFDLKIILPE 382
+ S + + TD +AIF N + GS+ N+ ++ PE
Sbjct: 619 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 662
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 30.3 bits (65), Expect = 8.1
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -3
Query: 528 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 349
T L FS+ + +++S S SSA+ VF+T S P+ S S + + ++I
Sbjct: 248 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 305
Query: 348 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 238
++ PS++ ++SP SS++ ++ TP+ Y + ST
Sbjct: 306 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 344
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 8.1
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -3
Query: 528 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 349
T L FS+ + +++S S SSA+ VF+T S P+ S S + + ++I
Sbjct: 225 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 282
Query: 348 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 238
++ PS++ ++SP SS++ ++ TP+ Y + ST
Sbjct: 283 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 321
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 8.1
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -3
Query: 528 TGCQLLFFSS*VAQIVFIVLVSKSLSSATNLIVFSTVCESGPTYSKLSVSGKIIFKSNIL 349
T L FS+ + +++S S SSA+ VF+T S P+ S S + + ++I
Sbjct: 225 TNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTIHSVPS-SPYIFSTENVGSASI- 282
Query: 348 SSDPSITLHLKIASSP--SSVSGWISYETPYLYFAFSST 238
++ PS++ ++SP SS++ ++ TP+ Y + ST
Sbjct: 283 TAFPSLSSSSTTSTSPTSSSLTTALTEITPFSYISLPST 321
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,950,129
Number of Sequences: 237096
Number of extensions: 2221002
Number of successful extensions: 5579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5564
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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