Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E04
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.34 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 380 ETDNFEY-VGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNE 556
           E  N EY +  D+  + N  + +++D+  +   +  +++ YD +NNN +  R E++ + E
Sbjct: 205 ECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHYD-RNNNGNLEREELEQFAE 263


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 479 KTIWATYDEKNNNWHPVRYEVKNYN 553
           KTI    +  NNN++   Y   NYN
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYN 112


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 596 FNFNTGFDKSAFDVSQYDCDDENVEEHTLQSET 694
           F    GFD    D   Y C+D    +  L  ET
Sbjct: 211 FWLRRGFDGFRVDALPYICEDMRFLDEPLSGET 243


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 497 YDEKNNNWHPVRYEVKNYNE 556
           YD K++   P  Y   NYNE
Sbjct: 530 YDSKSSTETPPSYNQLNYNE 549


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 596 FNFNTGFDKSAFDVSQYDCDDENVEEHTLQSET 694
           F    GFD    D   Y C+D    +  L  ET
Sbjct: 211 FWLRRGFDGFRVDALPYICEDMRFLDEPLSGET 243


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 413 SQTVENTIKFVAEDSDLETKTIKTIWATYDEKNN 514
           S T+EN  +  +  S  +TK  +   AT++E  N
Sbjct: 220 SSTIENESETESNASSTKTKMRRKSGATFEEIQN 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,670
Number of Sequences: 438
Number of extensions: 4791
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)