Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_E04
(779 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 34 0.092
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 31 0.65
At1g68600.1 68414.m07839 expressed protein contains Pfam profile... 31 0.65
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin... 30 1.5
At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR ... 30 2.0
At3g01910.1 68416.m00139 sulfite oxidase, putative similar to su... 29 4.6
At5g38260.1 68418.m04612 serine/threonine protein kinase, putati... 28 6.0
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 28 6.0
At4g37190.1 68417.m05265 expressed protein 28 6.0
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 28 6.0
At1g62640.1 68414.m07067 3-oxoacyl-[acyl-carrier-protein] syntha... 28 6.0
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 34.3 bits (75), Expect = 0.092
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 278 EIHPETDDGEDAIFKCNVMLGSE--DNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAE 451
++H + E A K L E D I DL+ + E E GPDSQ NT+K
Sbjct: 371 DVHKDLQSLESASKKQLKSLAEEMQDIIRDLEKLNQELTAAETDGPDSQVFRNTLKDFIS 430
Query: 452 DSDLETKTIKTIWA 493
++ E KT+ ++++
Sbjct: 431 IAETEVKTVLSLYS 444
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 31.5 bits (68), Expect = 0.65
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +2
Query: 296 DDGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAEDSDLETKT 475
+ GED F V +D++ + + + D EY G +++ EN L+
Sbjct: 177 ESGEDDDFLRVVEKEGDDDVEVDEELAKKMD--EYYGDEAEATENQF--------LKDYL 226
Query: 476 IKTIWATYDEKNNNWHPVRYEVKNYNELLGLLEKHEIWDYFNFNTGFDKSAFDVSQYDCD 655
+K +W +E+ P E+K +E + HE+WD +F G D+ Y +
Sbjct: 227 VKQLWKEKEERV----PGEEELKELSE-----DDHEVWDQEDFEAG---RPLDLLNYRHE 274
Query: 656 DENVEEHTL-QSETV 697
DEN + + QS V
Sbjct: 275 DENAGDTVMGQSRVV 289
>At1g68600.1 68414.m07839 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 537
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 449 EDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNELLG-LLEKHEIWDYFNFNTGFDKS 625
E D ETK IK++ +D NNN H + +++ +L+ E+W +F G +
Sbjct: 423 EAKDDETKVIKSLSQIWDTNNNNNHQSNDQSQHWMSTESMMLKNREMWPSMSFIDGTVVN 482
Query: 626 AFDVSQYD 649
+ Y+
Sbjct: 483 EIECKVYE 490
>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
[Arabidopsis thaliana] GI:1246401, GI:8163920
Length = 255
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 65 VAAATIDLKDEPLDWPETYHFEAVRMSISAGNVQDYSVWKTNHSSRVDYNKGAVKSIIVD 244
VAAAT+D + P+ FE V+ + D ++ T+H+S +++
Sbjct: 47 VAAATVDTNNMPMTGVVFQPFEEVKKA-------DLAIPITSHASLARQRFADASEAVIN 99
Query: 245 ENAKYRYGVSYEIH 286
E Y VSY H
Sbjct: 100 EQINVEYNVSYVYH 113
>At1g58400.1 68414.m06644 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/64 (18%), Positives = 28/64 (43%)
Frame = +2
Query: 329 VMLGSEDNIFDLKIILPETDNFEYVGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEK 508
++ E+N + ILP T N +Y G + V + D+ ++++ ++ +
Sbjct: 497 LLKAKEENFVQIASILPPTANSQYPGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVWENR 556
Query: 509 NNNW 520
+W
Sbjct: 557 RKSW 560
>At3g01910.1 68416.m00139 sulfite oxidase, putative similar to
sulfite oxidase GB:3212610 SP|P07850 [Gallus gallus],
Moco containing protein [Oryza sativa (japonica
cultivar-group)] GI:22759584; contains Pfam profiles:
PF00174: Oxidoreductase molybdopterin binding domain and
PF03404: Mo-co oxidoreductase dimerisation domain
Length = 393
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 392 FEYVGPDSQTVENTIKFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYN 553
FE SQT E K V ++++ + ++++W N +WH V + + N
Sbjct: 339 FEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSN 392
>At5g38260.1 68418.m04612 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 638
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 428 NTIKFVAEDSDLETKTIKTIWATYDEKNNNWHPVRYEVKNYNELLGLLEKHEIWDYFNFN 607
+T+KF + + E++ I+ + Y WHP + E+L L+ E+ ++
Sbjct: 80 STVKFHVLEMNYESRIIRLVRTEYLNNLCPWHPENRSIN--QEVLPFLQDTELGTFYYNC 137
Query: 608 TG--FDKSAFD-VSQYDCDDE 661
+G D+ A + Q CD+E
Sbjct: 138 SGPTVDELANGYIRQLGCDEE 158
>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
(PPR) repeat-containing protein contains Pfam profiles:
PF03016 exostosin family, PF01535 PPR repeat
Length = 1388
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 461 LETKTIKTIWATYDEKNNNWHPVRYEVKNYNELLGLLEKHEIWD 592
L +K + Y+ + ++ P+R VK+Y L+G +K+ W+
Sbjct: 1111 LPFSVVKMVRYVYERNSRDFSPIRNTVKDYINLVG--DKYPYWN 1152
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +2
Query: 239 VDENAKYRYGVSYEIHPETDDGEDAIFKCNVMLGSEDNIFDLKIILPETDNFEYVGPD 412
+D A YG+ ++ E GE+ + + D+I +K ++ ++ F V D
Sbjct: 173 MDSQAFNNYGIGKDVFSEASRGEEICDRLRFFVEECDHIQGIKFLVDDSGGFSAVAAD 230
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 476 IKTIWATYDEKNNNWHPVRYEVKNYNEL-LGLLEKHEIWDYFNFNTGFDKSAFDVSQYDC 652
+ T W Y + N+ W + + + +E+ +G+ ++ E + + F+ S DV Q D
Sbjct: 423 LSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKEIERDSFEFEISTVDVKQTDE 482
Query: 653 DDENVE 670
++ V+
Sbjct: 483 REKQVQ 488
>At1g62640.1 68414.m07067 3-oxoacyl-[acyl-carrier-protein] synthase
III, chloroplast / beta-ketoacyl-ACP synthase III /
3-ketoacyl-acyl carrier protein synthase III (KAS III)
identical to SP|P49243 3-oxoacyl-[acyl-carrier-protein]
synthase III, chloroplast precursor (EC 2.3.1.41)
(Beta-ketoacyl-ACP synthase III) (KAS III) {Arabidopsis
thaliana}
Length = 404
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 450 SATNLIVFSTVCESGPTYSKLSVSGKIIFKSNILSSDPSITLHLKIASSPSSVSGWI 280
S++N VF +YS + ++GK +F+ + SI L+ A P+S W+
Sbjct: 271 SSSNGSVFGDFPPKQSSYSCIQMNGKEVFRFAVKCVPQSIESALQKAGLPASAIDWL 327
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,162
Number of Sequences: 28952
Number of extensions: 358306
Number of successful extensions: 1090
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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