Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E03
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.037
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.15 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.26 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.34 
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    30   1.8  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 29   3.2  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  29   5.6  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 28   7.4  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   7.4  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 28   9.8  
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.8  
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.8  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   9.8  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   28   9.8  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 36/128 (28%), Positives = 60/128 (46%)
 Frame = +1

Query: 400 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 579
           +L L  SY YL  A +F+       GF K F K S +  E    L+K   +RGG++    
Sbjct: 208 NLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQD 267

Query: 580 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 759
               + D       E G  + ++  ALD +K + + +  +H+   K+     DA++T +I
Sbjct: 268 IKKPEKD-------EWGCGMDSIQVALDLEKHVNQALLDLHKIAEKHG----DAQMTDFI 316

Query: 760 EEEFVSXQ 783
           E  F++ Q
Sbjct: 317 EGNFLTEQ 324



 Score = 35.1 bits (77), Expect = 0.065
 Identities = 24/115 (20%), Positives = 53/115 (46%)
 Frame = +1

Query: 439 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYT 618
           A++F     +  GFA  F+K +++ +      ++ + KRGG++    H  +K  +     
Sbjct: 1   AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRD---- 54

Query: 619 VEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSXQ 783
              G+ + A+  AL  +K++   +  +H+    N     D ++  ++E  F+  Q
Sbjct: 55  -HWGNGLMAMRDALYLEKEINHALLDLHQVADTN----RDPQVQDFLESNFLGEQ 104


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 31/128 (24%), Positives = 59/128 (46%)
 Frame = +1

Query: 400 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 579
           +L L  SY Y+  A +F+       GF K F K S +  E    L K   +RGG++    
Sbjct: 140 NLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQD 199

Query: 580 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 759
              +K  +  ++    G    A+  ALD +K + + +  +H+   K+     D+++  ++
Sbjct: 200 ---IKRPERDDW----GCGQDAIQAALDLEKHVNQALLDLHKVAEKHG----DSQMQDWL 248

Query: 760 EEEFVSXQ 783
           E  +++ Q
Sbjct: 249 ESHYLTEQ 256


>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 208 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 369
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 228 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 350
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 220 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 369
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 421 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 519
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 31/128 (24%), Positives = 54/128 (42%)
 Frame = +1

Query: 400 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 579
           +L L  SY Y   A YF+    +  GF K F+K + +  E                    
Sbjct: 21  NLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEERE-------------------- 60

Query: 580 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 759
           H   K ++      E G  + A+  ALD +K + + +  + +   KN D    A+++ +I
Sbjct: 61  HAEKKPERD-----EWGSGLEAMQTALDLEKHVNQALIELEKTAEKNGD----AQMSDFI 111

Query: 760 EEEFVSXQ 783
           E+ F++ Q
Sbjct: 112 EDHFLTEQ 119


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 750 SDLSIVEEVAVFSDFPVDEENPLGKLLLRVQ 658
           SDL  +E    FSDF ++E   LGKL LR++
Sbjct: 137 SDLDDLETDFTFSDFSLEEFPELGKLALRIK 167


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 668 RSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 772
           ++SL     +S   SLKT+  ++M  SL TSRR S
Sbjct: 154 KTSLKTSLKASLKTSLKTSLKTSMKTSLKTSRRTS 188


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 653  KPWTRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 772
            KP  R+SS     SSS+G S  +++SST   S  +SR +S
Sbjct: 1005 KPARRQSSSSSSSSSSSGSSSYSSSSSTGSSSSGSSRSSS 1044


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 662 TRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS 772
           +R++SL R   +S   SLKT+  +   +S NTS + S
Sbjct: 117 SRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRS 153


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 505 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 600
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 622 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEIT 750
           E+G ++  L+KAL  +++LA +I  +  E T NS ++   E T
Sbjct: 458 ELGRQVQELSKALSLKQELANKI--MQNEGTMNSKMIKQYEDT 498


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +1

Query: 628 GHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSXQ 783
           G+ + A+  AL  +K++   +  +HR+  + +D    A++  +IEE F++ Q
Sbjct: 8   GNGLMAMEDALALEKEILSSLQALHRKAQEEND----AQMQDFIEETFLNEQ 55


>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 864

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 631 HEIGALAKALDTQKQLAERIFFIHRE---VTKNSDLLHDAEITQYI 759
           +EI +  +ALDT  Q A R+F I  +   VTKN  +  D E   Y+
Sbjct: 58  NEIYSFFRALDTASQSALRLFDISEDGVVVTKNPLVYTDGEENLYV 103


>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 697

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 631 HEIGALAKALDTQKQLAERIFFIHRE---VTKNSDLLHDAEITQYI 759
           +EI +  +ALDT  Q A R+F I  +   VTKN  +  D E   Y+
Sbjct: 54  NEIYSFFRALDTASQSALRLFDISEDGVVVTKNPLVYTDGEENLYV 99


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 397 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 510
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 219 YEGVCSHRCLSGSGCAGRGRLML 287
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +3

Query: 321 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQEI 500
           +S +  R   PI G+     R  G    +  +  PLSP   ++    D   R R  LQ +
Sbjct: 119 RSKSPVRSTSPILGRSSSPSRRGGSPSRILNSS-PLSPSKQVVDGDNDTVQRQRRELQLL 177

Query: 501 IGRFVGENHWSHKARH*EGWED 566
           IG     + +SH  +    W++
Sbjct: 178 IGELKDRDRFSHWKKDVRDWKE 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,992,785
Number of Sequences: 59808
Number of extensions: 468920
Number of successful extensions: 1221
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)