Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E02
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   9.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.7  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 GGRERLKSLKEELAEVLNAQAEANRGSPISKL 389
           G + +L SLKE  AE+ N   E N  S ++ L
Sbjct: 327 GFKWKLSSLKERSAEIFNTLGERNSSSKLTNL 358


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 543 SAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKN 668
           +AG D  N+ V     +    + EL++ L SH  +  SS  N
Sbjct: 474 NAGLDADNVDVEEVVNQRYPDLNELESQLTSHTNITTSSHHN 515


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 528 KEKRMSAGFDKQNLIVSSCTTEPSFVVKELQN 623
           +EK +++  +K+NL++SS     + + KE ++
Sbjct: 609 REKELTSNLEKKNLVISSLRETVAMLEKERES 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,831
Number of Sequences: 5004
Number of extensions: 56307
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)