Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E02
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical p...    32   0.56 
AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin ...    32   0.56 
AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like ...    32   0.56 
U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated ...    28   7.0  
U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated ...    28   7.0  
U88308-15|AAK68218.1|  548|Caenorhabditis elegans Uncoordinated ...    28   7.0  
U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated ...    28   7.0  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    28   7.0  
U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated ...    28   7.0  
AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like ad...    28   7.0  
AF144260-1|AAD37368.1|  535|Caenorhabditis elegans AP180-like ad...    28   7.0  
AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like ad...    28   7.0  
AF144258-1|AAD37366.1|  548|Caenorhabditis elegans AP180-like ad...    28   7.0  
AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like ad...    28   7.0  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    28   7.0  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    28   7.0  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z77659-8|CAB01170.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 534 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 689
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>Z77657-11|CAB01153.1|  958|Caenorhabditis elegans Hypothetical
           protein F23B12.8 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 534 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 689
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>AF295093-1|AAG03081.1|  958|Caenorhabditis elegans bimC kinesin
           BMK-1 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 534 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 689
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>AB024428-1|BAC19818.1|  958|Caenorhabditis elegans kinesin like
           protein KLP-14 protein.
          Length = 958

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 534 KRMSAGFDKQNLIVSSCTTEPSFVVKELQNNLCSHVQLQQSSPKNSEMHIID 689
           K+MS   D  + + +S   +   + K+L  N+C HV+  +S+ ++ E   +D
Sbjct: 525 KKMSDFIDTTSKLTNSLKADGDLLSKKLSENICPHVKSMESAHRDIESTAMD 576


>U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated
           protein 11, isoform c protein.
          Length = 657

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated
           protein 11, isoform a protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>U88308-15|AAK68218.1|  548|Caenorhabditis elegans Uncoordinated
           protein 11, isoform h protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated
           protein 11, isoform b protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated
           protein 11, isoform e protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AF144261-1|AAD37369.1|  456|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AF144260-1|AAD37368.1|  535|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AF144258-1|AAD37366.1|  548|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 180 ATFNDNLVNXREKYFFISK*EC 115
           A +ND ++N  EKYF ++K +C
Sbjct: 226 ACYNDGIINVLEKYFDMNKKQC 247


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 243 LGIFWFKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANRGSPISKL 389
           + ++W K K++ AKSD GG +   S K +      A +EA  GS +S +
Sbjct: 152 MDVYWGKNKKKPAKSD-GGSKSSSSKKNDARGPSEAPSEA--GSEVSSV 197


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 243 LGIFWFKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANRGSPISKL 389
           + ++W K K++ AKSD GG +   S K +      A +EA  GS +S +
Sbjct: 152 MDVYWGKNKKKPAKSD-GGSKSSSSKKNDARGPSEAPSEA--GSEVSSV 197


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 258  FKKKREYAKSDPGGRERLKSLKEELAEVLNAQAEANR 368
            F+K  E  K+     ERLK L+E+L +    QAE +R
Sbjct: 952  FEKALEQRKAKKEEAERLKKLEEKLKKEKEKQAEKDR 988


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,467
Number of Sequences: 27780
Number of extensions: 316696
Number of successful extensions: 620
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)