Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_E01
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20050.1 68418.m02387 protein kinase family protein contains ...    28   3.8  
At2g32330.1 68415.m03952 expressed protein   contains Pfam profi...    28   3.8  
At1g73650.3 68414.m08526 expressed protein                             28   3.8  
At1g73650.2 68414.m08528 expressed protein                             28   3.8  
At1g73650.1 68414.m08527 expressed protein                             28   3.8  
At1g72240.1 68414.m08352 expressed protein                             27   5.0  
At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2 (...    27   8.8  
At2g21420.1 68415.m02549 zinc finger protein-related contains lo...    27   8.8  

>At5g20050.1 68418.m02387 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 452

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 87  GRPMKFPYTFSAKVAQFPYKFYLQNL 164
           GR ++  Y+F  KVA  P KF L++L
Sbjct: 73  GRELRIEYSFLRKVAGVPTKFKLEDL 98


>At2g32330.1 68415.m03952 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 320

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 3   KTEKVISNY*VFSIFSSFTYALTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWR 176
           ++ K+IS   V S F+S TY +   D  P + +K+P +F  +   +P    L +   WR
Sbjct: 153 QSSKIISA--VVSFFTS-TYMMRWGDFFPHKKLKYPPSFDGRAVCYPTSDILLDYLAWR 208


>At1g73650.3 68414.m08526 expressed protein
          Length = 302

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 171 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 272
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g73650.2 68414.m08528 expressed protein
          Length = 291

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 171 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 272
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g73650.1 68414.m08527 expressed protein
          Length = 290

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 171 WRYWAAAIVISSPLFYKIHKMSNSPENVSKWAEI 272
           W  W    +I +    +     NSPEN  KW ++
Sbjct: 142 WTMWVFGFLIEAAADQQKLSFKNSPENRGKWCDV 175


>At1g72240.1 68414.m08352 expressed protein
          Length = 133

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 151 TSRICGSGVTGLPPS*FPHHSSTKFTKCQTPLKM*ASGLKSEGKK 285
           T+  CGS  T    S    +SS+  + C +PL+      K +GKK
Sbjct: 75  TATYCGSTSTSSSSSVSSCYSSSSVSSCSSPLQYRYREKKKDGKK 119


>At2g44160.1 68415.m05493 methylenetetrahydrofolate reductase 2
           (MTHFR2) identical to SP|O80585
           Methylenetetrahydrofolate reductase (EC 1.5.1.20)
           {Arabidopsis thaliana}
          Length = 594

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 213 RVVRKLRWRQPSNARATDSGGKIYMGTERPSLRTCKGTSWGD--QGR 79
           ++ R L WR+P+N   T    +      RP     +   W D  QGR
Sbjct: 307 KISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGR 353


>At2g21420.1 68415.m02549 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 468

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -1

Query: 294 VRQLLSF*FQPTCLHF--QGSLTFCEFCRRVVRKLR---WRQPSNARATDSGGKIYMGTE 130
           V+++L     PTCLHF     LTF E C +V+       W++        +  KIY    
Sbjct: 218 VQRMLLCGISPTCLHFPCNSELTF-ESCSKVLTPNLIEFWKRKIEEDLVPAADKIYCPYR 276

Query: 129 RPSLRTCK 106
           R S+   K
Sbjct: 277 RCSMLMSK 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,583,765
Number of Sequences: 28952
Number of extensions: 176684
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)