Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D20
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56| Best HMM Match : Actin (HMM E-Value=0) 387 e-108
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 387 e-108
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 386 e-107
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 385 e-107
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 283 8e-77
SB_54| Best HMM Match : Actin (HMM E-Value=0) 219 2e-57
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 218 4e-57
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 216 1e-56
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 206 1e-53
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 4e-43
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 3e-23
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 82 4e-16
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 71 8e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 56 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 3e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 44 1e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.003
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.45
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.4
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 30 1.8
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 2.4
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 4.2
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 5.5
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 9.6
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 387 bits (952), Expect = e-108
Identities = 181/185 (97%), Positives = 184/185 (99%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 394
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 574
VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 575 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 754
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 222
Query: 755 FXQEM 769
F QEM
Sbjct: 223 FEQEM 227
Score = 81.8 bits (193), Expect = 6e-16
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 387 bits (952), Expect = e-108
Identities = 181/185 (97%), Positives = 184/185 (99%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 394
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 574
VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 163
Query: 575 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 754
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD
Sbjct: 164 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 755 FXQEM 769
F QEM
Sbjct: 224 FEQEM 228
Score = 85.0 bits (201), Expect = 6e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 85 LCXXXVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
+C VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 386 bits (950), Expect = e-107
Identities = 180/185 (97%), Positives = 184/185 (99%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 394
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 574
VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HT
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 163
Query: 575 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 754
VPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD
Sbjct: 164 VPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 223
Query: 755 FXQEM 769
F QEM
Sbjct: 224 FEQEM 228
Score = 81.4 bits (192), Expect = 7e-16
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
+AALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 6 IAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 385 bits (947), Expect = e-107
Identities = 181/186 (97%), Positives = 184/186 (98%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 394
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 574
VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HT
Sbjct: 103 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHT 162
Query: 575 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 754
VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALD
Sbjct: 163 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALD 222
Query: 755 FXQEMA 772
F QEMA
Sbjct: 223 FEQEMA 228
Score = 81.8 bits (193), Expect = 6e-16
Identities = 37/38 (97%), Positives = 37/38 (97%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
VAALVVDNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 5 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 283 bits (695), Expect = 8e-77
Identities = 146/185 (78%), Positives = 150/185 (81%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 394
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 44 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
Query: 395 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 574
VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DS
Sbjct: 104 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDS------- 156
Query: 575 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 754
G + H + I ERGYSFTTTAEREIVRDIKEKLCYVALD
Sbjct: 157 -----GDGVSHTV---------------PIYEERGYSFTTTAEREIVRDIKEKLCYVALD 196
Query: 755 FXQEM 769
F QEM
Sbjct: 197 FEQEM 201
Score = 81.0 bits (191), Expect = 1e-15
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
+AALV+DNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 6 IAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 219 bits (536), Expect = 2e-57
Identities = 97/144 (67%), Positives = 122/144 (84%)
Frame = +2
Query: 338 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 517
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 518 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 697
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 698 AEREIVRDIKEKLCYVALDFXQEM 769
AE++I+RD+KE LCY A+D+ +E+
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYEREL 2272
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/59 (49%), Positives = 37/59 (62%)
Frame = +1
Query: 34 AVXSIPASPTQTHTKFNLCXXXVAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQ 210
AV AS T+ F V +V+DNGSG CKAG + ++PR VFP+IVGRPRH+
Sbjct: 2074 AVAMNIASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 218 bits (533), Expect = 4e-57
Identities = 104/113 (92%), Positives = 109/113 (96%)
Frame = +2
Query: 431 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 610
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 611 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEM 769
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF QEM
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 190
Score = 98.7 bits (235), Expect = 5e-21
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +2
Query: 215 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF 358
VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 43 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 81.4 bits (192), Expect = 7e-16
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQG 213
VAALV+DNGSGMCKAGFAG DAPRAVFPSIVGRPRHQG
Sbjct: 5 VAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 216 bits (528), Expect = 1e-56
Identities = 97/178 (54%), Positives = 130/178 (73%), Gaps = 1/178 (0%)
Frame = +2
Query: 236 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 412
KD VGDEA R +L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 413 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 592
PLNP NREKM ++MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG
Sbjct: 113 PLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEG 172
Query: 593 YALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQE 766
+ALPH RLD+AGRD+T YL+K++ RGY+F TA+ E VR +KEKLCYV + QE
Sbjct: 173 FALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQE 230
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 103 AALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRP 201
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 206 bits (504), Expect = 1e-53
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +2
Query: 452 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 631
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 632 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEM 769
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (417), Expect = 4e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +2
Query: 386 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 565
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 566 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 733
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 3e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +2
Query: 296 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 475
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 476 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 655
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 656 MKILTE 673
++ E
Sbjct: 123 RQMFEE 128
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 82.2 bits (194), Expect = 4e-16
Identities = 40/92 (43%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = +2
Query: 497 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 673
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 674 RGYSFTTTAEREIVRDIKEKLCYVALDFXQEM 769
RG++FT+++ +IV DIKEK+CY++ D +E+
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEV 858
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +1
Query: 13 PMTRSLAAVXSIPASPTQTHTKFNLCXXXVAALVVDNGSGMCKAGFAGXDAPRAVFPSIV 192
P+T A IP + + ++ F L A+V+DNG G+ K GFAG PR + P++V
Sbjct: 672 PITLCTAFATVIPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVV 730
Query: 193 GRPR 204
G P+
Sbjct: 731 GNPQ 734
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 71.3 bits (167), Expect = 8e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +2
Query: 491 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 646
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 647 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMA 772
++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +1
Query: 109 LVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQ 210
LV+D GS M K GFAG DAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 224 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 403
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.45
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 533 TGIVLDSGDGVSHTVPI 583
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = -3
Query: 207 VARATHDGREDGAGRVXAGETGLAHAGAIVD 115
+AR+ DG E+G+G + +GETGLAH GAI+D
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIID 31
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Frame = +2
Query: 245 YVGDEAQSKRGILTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 418
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE----------------- 315
Query: 419 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVP 580
+ M +I+FE +N A+ A LS Y S +V+D+G +H VP
Sbjct: 316 ---GLEDAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVP 372
Query: 581 IYEGYALPHAILR 619
++ G + A+ R
Sbjct: 373 VFNGKVIKKAVRR 385
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 100 VAALVVDNGSGMCKAGFAGXDAPRAVFPSIVGRPRHQGR 216
+A LV+D G+ K GFA APR++ P+ + + + + R
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSERR 270
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 341 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 520
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 521 SGRTTGIV 544
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.45
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -2
Query: 709 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 542
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 541 DTGGTTGGVQ 512
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 287 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 439
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = -1
Query: 257 RHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASXPAKPALHMPEPLSTTSAA 102
RH R LS Y P W + G T R PAKP+L++P P S T ++
Sbjct: 520 RHYNR-LSNQY----PKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKTPSS 566
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 428 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 544
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 673 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 530
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 206 WRGRPTMDGKTARGASXPAKPALHMPEPLSTTSAA 102
W + G T R PAKPAL++P P S T ++
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -2
Query: 448 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 269
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 268 AL 263
++
Sbjct: 214 SV 215
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 182 GKTARGASXPAKPALHMPEPLSTTSAA 102
G T R PAKPAL++P P S T ++
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -3
Query: 633 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 454
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 453 IWVIFSLLALGLR 415
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +1
Query: 169 RAVFPSIV----GRPRHQGRDGRYGPERLLRG*RGPEQERYPHSEVPHR 303
R+V PS V G R + R PER +G ++ER HSE P R
Sbjct: 988 RSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRDSAKKERQSHSESPQR 1036
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 173 ARGASXPAKPALHMPEPLSTTSAATXXXHRLNFVCVCVGDAGIDXTAARLRVIGRPN 3
ARG + A P+ ++P+ L S + + C CVG G + + R GRP+
Sbjct: 1763 ARGLTGVAPPSAYIPQCLDDGSYESVQCLQATQYCWCVGSNGFEIPGS--REFGRPD 1817
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 4.2
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -3
Query: 573 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 421
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 420 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 256
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 616 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 518
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 431 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 580
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 416 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 544
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -1
Query: 269 CSGPRHPRRSLSGPYRPSRPWWRGRPTMDGKTARGASXPAKPAL 138
C+ P S GP R S P RG PT +RG P K A+
Sbjct: 1301 CTTPHRSSASF-GPNRVSTPK-RGSPTSRNTPSRGLRTPVKTAM 1342
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -3
Query: 582 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 406
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 405 VSSTGCSSGATRSSL*KVW 349
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,714,821
Number of Sequences: 59808
Number of extensions: 453054
Number of successful extensions: 1490
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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