Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D15
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 225 5e-60
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 43 7e-05
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 31 0.29
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.66
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.87
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 28 1.5
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 27 4.7
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 27 4.7
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 8.1
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 225 bits (551), Expect = 5e-60
Identities = 121/274 (44%), Positives = 170/274 (62%), Gaps = 1/274 (0%)
Frame = +2
Query: 59 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNH 238
+ L +T+SPD N A + L++AA T+F ++ +L+ L + RMAAGL LKN
Sbjct: 5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNA 64
Query: 239 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGT-ENSRPSSAAQCVAYVAVAELPV 415
+T+++ K +YQQ W +L +++ +K L +G+ E+ SAAQ VA +A EL
Sbjct: 65 ITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELAT 124
Query: 416 GQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMRS 595
QW DL+ LV NV Q + LK+ + L+ IGYIC+ + EVL+ +SN ILTA++ G R
Sbjct: 125 NQWPDLMVTLVANVGEGQPSALKQHS-LQTIGYICESVSPEVLSAQSNAILTAVVAGARK 183
Query: 596 TEPSNHVRLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLVK 775
EP VRLAA AL +SLEF R NF E ERN+IM+VVCEATQS + I AA CLVK
Sbjct: 184 EEPDAAVRLAALGALYDSLEFVRENFNNEYERNYIMQVVCEATQSPEASIQTAAFGCLVK 243
Query: 776 ILSLYYQHMEPYMGQALFPITLEAMKSDIDXISL 877
I+ LYY M YM +ALF +T + M + + ++L
Sbjct: 244 IMHLYYDTMPFYMEKALFALTTQGMYNTNEQVAL 277
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 42.7 bits (96), Expect = 7e-05
Identities = 51/208 (24%), Positives = 98/208 (47%), Gaps = 4/208 (1%)
Frame = +2
Query: 29 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVAR 208
M A+ TL L Q+L ++++PD ++ A R L+ + + + ++ N QV +
Sbjct: 1 MDAQFTLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFH-IMGTCENPQVRQ 59
Query: 209 MAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAI--GTENSRPSSAAQC 382
+AA ++ + L +Y W ++ DV+ I+ N+L E+ + +
Sbjct: 60 LAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRV 107
Query: 383 VAYVAVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQ 562
+A +A +LP G+WN+L L VQ+T + ++ E Y+ I AE + + N+
Sbjct: 108 IAALAKLDLPEGKWNELSAFL------VQATMDQNDSIREMAVYVLYSI-AETV-DLDNK 159
Query: 563 ILTAIIH--GMRSTEPSNHVRLAATQAL 640
+L ++ T+ S VR+ + Q L
Sbjct: 160 LLLDFVNLFSQTITDSSRTVRVTSVQGL 187
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 221 LQLKNHLTSKDP--TLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYV 394
LQ+K ++ P TL+ ++ W + D ++++ + P +C+ Y+
Sbjct: 25 LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84
Query: 395 AVAELPVGQWND 430
A++ + Q+ +
Sbjct: 85 ALSHYKLKQYEE 96
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.5 bits (63), Expect = 0.66
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +2
Query: 110 VRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLKQQYQQRWL 289
++Y++ A T + + LL GG+ +A++ + K HL S D TL+ +
Sbjct: 191 LKYVESLAVALRTESVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDITLE-------I 243
Query: 290 ALAEDVRLYIKENILAAIGTENSRP-SSAAQCV 385
A+ + +R I + I N P S C+
Sbjct: 244 AILKSMRCIIGQKIGTDFYLSNKYPIDSVVHCL 276
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +2
Query: 623 AATQALLNSLEFTRANFE---KENERNFIMEVVCEATQSSDMRISVAALQCLVKIL 781
AA Q+LLN+ F ANFE KE+ +NF ++++ E ++ +RI + L CLV L
Sbjct: 437 AAHQSLLNTNMFNDANFEFMVKEHIKNF-LKLLKE--HNNPVRI-IKLLDCLVLTL 488
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 35 AETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMA 214
A T + I +L ++ + LEA Y+ TNF K + +++ S V+ M
Sbjct: 266 ASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPASTSDVSGMV 325
Query: 215 A 217
A
Sbjct: 326 A 326
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 641 LNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLVKI 778
L+ E + E+E+N +CE SSD I +A L+ L ++
Sbjct: 366 LDISEMISSYLHVEDEKNVFYLALCEFLNSSDYSILIATLRTLARL 411
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 440 ILVENVVHVQSTELKKEAT--LEAIGYI-CQDIDAEVLTERSNQILTAIIHGMRSTEPSN 610
+ ++ VV +S L A +E I I QD+D E L + N I+ G E +
Sbjct: 164 VRIDGVVKPRSRFLGNSAASIMEGIASIKLQDLDEEYLITQPNVYARGILFGKMRLELGD 223
Query: 611 HVRLAATQALLNS-LEFTRANF 673
HV + + L + +EF F
Sbjct: 224 HVTVRCPKTDLQADIEFKVKGF 245
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 592 PHAMYDGRKNLITSFC*YFSINILTNVANSLQSRFLFEFSRLDMNNI 452
PH + +N + FC + + ++N S + L S D+NN+
Sbjct: 256 PHFYLNDSRNSLNYFCPFSAFEDISNSVRSSCGKRLSPSSNFDLNNL 302
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 114 LTAASNSFRSGETVFSSICISVNVVSACI 28
LTA + S +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,654
Number of Sequences: 5004
Number of extensions: 64049
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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