Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D15
(878 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 119 3e-27
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 39 0.005
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12) 33 0.40
SB_5254| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13293| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_53501| Best HMM Match : YTV (HMM E-Value=7.8) 28 8.7
SB_50977| Best HMM Match : DUF1409 (HMM E-Value=0.91) 28 8.7
SB_11778| Best HMM Match : DUF1409 (HMM E-Value=0.91) 28 8.7
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 119 bits (287), Expect = 3e-27
Identities = 59/111 (53%), Positives = 78/111 (70%)
Frame = +2
Query: 47 LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQ 226
+ L ++LE TVSPD EL+AA +YL+ AA N F+ +L + L G SQVARMAAGLQ
Sbjct: 1 MDLTKVLEATVSPDLAELQAAQKYLEEAAQVNLPQFLLVLVNELADGSKSQVARMAAGLQ 60
Query: 227 LKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQ 379
LKN LTSKD ++ QYQQRWL L ++VR ++K+ LA +G E +RP+ A Q
Sbjct: 61 LKNQLTSKDDIVRAQYQQRWLGLDKEVRDHVKKMSLATLGNETARPAIAPQ 111
Score = 72.5 bits (170), Expect = 4e-13
Identities = 34/50 (68%), Positives = 39/50 (78%)
Frame = +2
Query: 530 DAEVLTERSNQILTAIIHGMRSTEPSNHVRLAATQALLNSLEFTRANFEK 679
+ E L +N+ILT II GMR EPSNH+RLAAT ALLNSLEFT+ NFEK
Sbjct: 112 EPEHLVSHANKILTVIIQGMRKEEPSNHIRLAATTALLNSLEFTKQNFEK 161
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 39.1 bits (87), Expect = 0.005
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Frame = +2
Query: 191 NSQVARMAAGLQLKNHLTS--KDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRP 364
NS+ AR A LQ+ N+ S +D T+K + A AED+ + I + ++ I +S P
Sbjct: 235 NSENARHA--LQISNYADSLVRDTTIKAVKDVQTYAFAEDLSIDIIGDAMSEIPQTDSVP 292
Query: 365 SSAAQCVAYVAVAELPVGQW-NDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEV 541
SS++ + + E + + ++L+ ++EN V E K+ IC D V
Sbjct: 293 SSSSSSESSELLHEKQLDIFVDELLKEVIENA--VSDVEQIKDFANNLSDIICADSTITV 350
Query: 542 LTERS-NQILTAIIHGMRSTEPSNHVRLAATQALLNSLEFTRANFEKENERN 694
+TER + A+ + + + +A + L + T+ F N +N
Sbjct: 351 ITERKLKEENEALERSSYLNDRPSRLSVAEVEHLDADEKTTQPYFPSNNNQN 402
>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
Length = 492
Score = 32.7 bits (71), Expect = 0.40
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVGQWNDLIP 439
LK + + + E+V+ +IK L AIG + + + A+ + W L+P
Sbjct: 88 LKNNVKSHYHSFPEEVKEFIKAECLQAIGDPSPLIRATIGILITTIAAKGDLTNWQQLLP 147
Query: 440 ILVENVVHVQSTELKKEATLEAIGYICQD----IDAEVLTERSNQILTAIIHGMRSTEPS 607
L + ++ + + E + A+ IC+D +D++ L N ++ + R P
Sbjct: 148 TLCQ-LLDSEDYNV-CEGSFGALQKICEDSAEQLDSDALNRPLNVLIPKFLQFFRHASPK 205
Query: 608 NHVRLAATQALLNSLEFT 661
+RL L+N + ++
Sbjct: 206 --IRL--VPILVNGMRYS 219
>SB_5254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/88 (22%), Positives = 36/88 (40%)
Frame = +2
Query: 203 ARMAAGLQLKNHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQC 382
A G Q+ N + K+ ++AE ++ I E + + R + AQ
Sbjct: 2 AEHGLGWQMLNEAPRRKEETKKAAVAAGASIAEHIKHAIAEQVKKPVSLGFPRSLTLAQK 61
Query: 383 VAYVAVAELPVGQWNDLIPILVENVVHV 466
+ Y A G +D+ P+L + +HV
Sbjct: 62 LLYAVPATPVEGTASDITPLLTQLEIHV 89
>SB_3323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 872
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +2
Query: 443 LVENVVHVQSTELKKEATLEAIGYICQDIDAEV--LTERSNQILTAIIHGMRSTEPSNHV 616
L EN VHV +K+ T + + ++DA+V + E + L I+ + + N +
Sbjct: 750 LRENQVHVSQELEEKQVTCQQLQSRLDELDADVDKMAEDRQRNLADIVAIQQKAKYYNQL 809
Query: 617 RLAATQALLNSLEFTRANFEKENER-NFIMEVVCEATQ 727
+ AL + E A +K+ +R +M +V Q
Sbjct: 810 KEGRYTALCKTPESLEAEMQKQRDRLQSLMTIVDRLNQ 847
>SB_13293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 392 VAVAELPVGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEV 541
+A ELP GQW +L+ + ++ V Q +++ EA+ + I++EV
Sbjct: 2 IAKHELPAGQWPELL-LFLQEYVRSQEAANREDRACEAMEIFDELIESEV 50
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/91 (24%), Positives = 39/91 (42%)
Frame = +2
Query: 50 TLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQL 229
T+ ++L T+ P+ + V D TNF + + +S+ + A AGL++
Sbjct: 296 TITKVLGVTLVPEPRKSLYLVASEDEFLKTNFNNYYRTMSEYKKPFEDEDSAVRKAGLEI 355
Query: 230 KNHLTSKDPTLKQQYQQRWLALAEDVRLYIK 322
+ T P Y+Q+WL D + K
Sbjct: 356 VSMKTGIVPC---PYRQKWLKEKGDPSKFAK 383
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 239 LTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENS--RPSSAAQCVAYVAVA 403
L K+ +LK+Q+ QR + VR + ++ GT+ S +P A +A A
Sbjct: 284 LNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIPTQGTQQSGPKPDDPVSTAAAIAAA 340
>SB_53501| Best HMM Match : YTV (HMM E-Value=7.8)
Length = 128
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 617 RLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLV-KILSLYY 793
RL ++ ++E + ERN + + VCEA +S+ + ++ AA + L+ K + +
Sbjct: 29 RLYELPVVMAAMEQLSQIYGNVKERNAVTKKVCEAGEST-LSVATAASKPLIQKATNTAF 87
Query: 794 QHMEPYMGQALFPI-TLEAMKSD 859
+P +G+ P+ T++ + S+
Sbjct: 88 TLAKPVIGEVNDPVSTIDNVASE 110
>SB_50977| Best HMM Match : DUF1409 (HMM E-Value=0.91)
Length = 256
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 11 MKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATT 139
M+N T + E L ++++ E +S + NEL+ YLD T
Sbjct: 111 MRNEATSYQEK-LHILELRESQISTENNELKELCLYLDQQRKT 152
>SB_11778| Best HMM Match : DUF1409 (HMM E-Value=0.91)
Length = 336
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 11 MKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATT 139
M+N T + E L ++++ E +S + NEL+ YLD T
Sbjct: 111 MRNEATSYQEK-LHILELRESQISTENNELKELCLYLDQQRKT 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,455,819
Number of Sequences: 59808
Number of extensions: 455431
Number of successful extensions: 1416
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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