Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D15
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 296 2e-80
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 41 0.001
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.1
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 31 1.4
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.4
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 31 1.4
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.8
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 5.8
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 296 bits (726), Expect = 2e-80
Identities = 147/275 (53%), Positives = 188/275 (68%)
Frame = +2
Query: 53 LIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLK 232
++ +LEKTVS ++N+ + A+ Y+ A +F F++ LS +L R AAGLQLK
Sbjct: 9 MLTVLEKTVSQNQNDQKQAMDYIAAACQQDFPVFVQCLSMILRTQQCQSFVRQAAGLQLK 68
Query: 233 NHLTSKDPTLKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELP 412
N L +K+ K Y QRWL L +VR +K+N+ +GTE SRPS AAQCVA +A AELP
Sbjct: 69 NVLCAKETETKNVYLQRWLQLTAEVREQVKQNVTGTLGTEPSRPSIAAQCVAAIACAELP 128
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
W ++I +L NV QS E+ KE++LE +GYICQDID VL ++N +LTAIIHGMR
Sbjct: 129 QNLWPNVINLLKSNVTESQSGEMLKESSLETLGYICQDIDPRVLETKANDVLTAIIHGMR 188
Query: 593 STEPSNHVRLAATQALLNSLEFTRANFEKENERNFIMEVVCEATQSSDMRISVAALQCLV 772
E S +VR AAT ALLNSLEFT NF E ERN IM+VVCE+T SSD R+ VAALQCLV
Sbjct: 189 PEESSANVRFAATNALLNSLEFTNTNFSNEAERNIIMQVVCESTSSSDQRVKVAALQCLV 248
Query: 773 KILSLYYQHMEPYMGQALFPITLEAMKSDIDXISL 877
+I+ LYY+HM YMG ALF ITL AMKS +++
Sbjct: 249 RIMQLYYEHMLSYMGSALFQITLSAMKSQEPEVAM 283
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 41.1 bits (92), Expect = 0.001
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Frame = +2
Query: 83 PDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQ-----VARMAAGLQLKNHLTS 247
PD++ELE ++ L HA +T+ + + L+Q Q + + + ++ TS
Sbjct: 5 PDQHELEQVIQLLQHAHSTD-RDVQRNVQVQLVQLNEHQKFCCYLVYILSDMKEMIDATS 63
Query: 248 KDPT---LKQQYQQRWLALAEDVRLYIKENILAAIGTENSRPSSAAQCVAYVAVAELPVG 418
+ LK + +W +DV+ +++ L +IG + + + V E +
Sbjct: 64 RSLAGLLLKNNIRAKWNKYPQDVKFFVRTTCLKSIGDQEPLIRATVGIIVTTIVMEENMC 123
Query: 419 QWNDLIPILVENVVHVQSTELKKEATLEAIGYICQD 526
W DL+ L V +Q EL +E L A+ + +D
Sbjct: 124 DWPDLLDTLA--TVLMQPDELMQEGALGALQKVFED 157
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1648 IANWETVLKLIKEKIMKLSPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1706
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1707 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1741
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1636 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1694
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1695 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1729
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1648 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1706
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1707 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1741
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1534 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1592
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1593 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1627
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1535 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1593
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1594 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1628
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1617 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1675
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1676 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1710
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1636 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1694
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1695 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1729
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1648 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1706
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1707 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1741
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1534 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1592
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1593 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1627
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1535 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1593
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1594 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1628
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1617 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1675
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1676 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1710
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1648 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1706
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1707 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1741
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 VGQWNDLIPILVENVVHVQSTELKKEATLEAIGYICQDIDAEVLTERSNQILTAIIHGMR 592
+ W ++ ++ E ++ + T L + T+ Q+ AI HG
Sbjct: 1648 IANWETVLKLIKEKIMKLPPTSLANALEKRMVDPQTGVFKGRT-TDMELQLWAAIYHGYL 1706
Query: 593 STEPSNHVRLAATQALLNSLE--FTRANFEKENERN 694
S E HV T +L +++E F AN + N+RN
Sbjct: 1707 SIENPEHVTTIGT-SLTDAIENGFINANNAEFNDRN 1741
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 224 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 316
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 224 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 316
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 224 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 316
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 224 QLKNHLTSKDPTLKQQYQQRWLALAEDVRLY 316
QL NH+ PTL+ Q++ A+ +DV Y
Sbjct: 286 QLTNHIRDTLPTLRDSLQKKMFAMEKDVAEY 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,227
Number of Sequences: 27780
Number of extensions: 358601
Number of successful extensions: 1056
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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