Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D14
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 291 1e-79
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 29 0.80
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 27 4.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 26 5.6
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 291 bits (713), Expect = 1e-79
Identities = 148/234 (63%), Positives = 169/234 (72%)
Frame = +3
Query: 123 KLXIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLG 302
KL I ++L GK VL+RVDFNVPL ITNN RIV AL ++KYAL++ K+V+LMSHLG
Sbjct: 6 KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPKAVILMSHLG 65
Query: 303 RPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENLRFHI 482
RP+G KY+LKPVA EL KLL K V FL+DC+GPEVE AC G +ILLENLRFHI
Sbjct: 66 RPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKEAKGGEVILLENLRFHI 125
Query: 483 EEEGXGVDASGAKVKADPEKVKAFRASLRKLGDVYINDAFGTAHRAHSSMVGEGFEQRAS 662
EEEG G KVKAD V+AFR SL LGD+++NDAFGTAHRAHSSMVG R S
Sbjct: 126 EEEG-SAKVDGKKVKADASAVEAFRKSLTSLGDIFVNDAFGTAHRAHSSMVGVDL-PRVS 183
Query: 663 GFLLKKELQYFAKALHEPERPFLAILGGAKVXXKXXXXXXXXDKVNEMIIGGGM 824
GFL+KKEL YF+KAL P RPFLAILGGAKV K DKVN +II GGM
Sbjct: 184 GFLMKKELDYFSKALENPARPFLAILGGAKVADKIQLIDNLLDKVNRLIICGGM 237
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.80
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 195 KEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLLN 374
K V +AAL+ ++ KG K+VV++ G P G + LKP + + L
Sbjct: 443 KARVFDAENDFIAALERGEFK--KGEKTVVIIRFEG-PKGGPGMPEMLKPSSAIMGAGLG 499
Query: 375 KDVTFLND 398
KDV L D
Sbjct: 500 KDVALLTD 507
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +3
Query: 354 ELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENLRFHI 482
E LL T + + P++ NP ++++L NL+ +
Sbjct: 145 ETDALLKNSATSIYKAVFPDLVQVLPNPEINNLVILRNLKLEV 187
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -1
Query: 472 RRFSSRIIEPAEGLAHAVSTSGPMQSFKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKC 293
+ F S ++E + + VS + P +S N S +SSA+ + + P +PK
Sbjct: 176 QEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSASPAEIGMEHAGPKMIPKA 235
Query: 292 DIS 284
S
Sbjct: 236 SSS 238
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +3
Query: 177 DFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLGRPDGQVNLKYTLKPVAEE 356
DF + + +N Q V+ +V +++ + +V ++HL D + + E
Sbjct: 285 DFPIDPFLSLESNVQTSVSQSSAVLKSINLAKQELVSVNHLVADDTKTPSPNLSSEIIEN 344
Query: 357 LKKLLNKDVTFLNDCIGPE 413
K + K + LN + PE
Sbjct: 345 TKADIKKSIRSLNKAVSPE 363
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 11 ILSISLHRNLKISRKLPKTESFEE 82
I + SLHR+ S K+ K SF+E
Sbjct: 137 ITNFSLHRSFSASGKMEKNNSFKE 160
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.9
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = -1
Query: 463 SSRIIEPAEGLAHAVSTSGPMQSFKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKCDIS 284
SS I + + STS + S + +S FS+ SSS+ + F+ IS
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS--MSSSSSFSSSPTSSSSTIS 344
Query: 283 TTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRI 167
++ +P S ++ + + ++ F T S S + S+ +
Sbjct: 345 SSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,535
Number of Sequences: 5004
Number of extensions: 57507
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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