Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D12
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)                  89   6e-18
SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)                     31   0.93 
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  

>SB_14697| Best HMM Match : Psf2 (HMM E-Value=8.7e-08)
          Length = 323

 Score = 88.6 bits (210), Expect = 6e-18
 Identities = 39/49 (79%), Positives = 45/49 (91%)
 Frame = +1

Query: 730 FEADRRAIIITINSFGTELSKDDRAKLYPRCGKLNPDGLAALARADDYE 876
           FEADRRA IITINSFGTELSKDDR KL+P+CGKL PDGL+ L++ADDY+
Sbjct: 45  FEADRRAFIITINSFGTELSKDDRQKLFPQCGKLYPDGLSRLSKADDYD 93


>SB_6581| Best HMM Match : HEAT (HMM E-Value=3e-05)
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 640  TLYKAYLEAFYDFCKQIGGTTADVMCEILXFEADRRAIIITINSFGT 780
            T+YKA +E  +D+C+ +    +  + + L    +R A IIT ++F T
Sbjct: 1054 TIYKALIEPHFDYCRPVWHDISSKLYDKLQKLQNRSARIITKSNFDT 1100


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +1

Query: 172 LKQSDYLNLVQCETLEDLKLHLQGTDYGT-FLANEPSPLSVSTIDDKLREKLVIEFQHLR 348
           +K+ + + ++QC+ +ED+K   Q  D G   +A + S  +V+    +L+++L      +R
Sbjct: 361 MKEIEEMQVLQCKEIEDIKATAQSRDSGDGSVARKESLENVA----QLKQQLQAYEHEIR 416

Query: 349 NHSVEPLSTFLDFITYSYMIDNIILLITGTLHQR 450
           N   E  +    F      +++ I ++ G + +R
Sbjct: 417 NLKAELKNQKHGFTECKQSLESAITVLEGRIKER 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,284,196
Number of Sequences: 59808
Number of extensions: 576101
Number of successful extensions: 1351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)