Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_D12
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28715.1 68416.m03584 H+-transporting two-sector ATPase, puta...   317   5e-87
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...   317   5e-87
At1g77320.1 68414.m09005 BRCT domain-containing protein contains...    29   5.4  
At5g24820.1 68418.m02932 aspartyl protease family protein low si...    28   9.5  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    28   9.5  

>At3g28715.1 68416.m03584 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score =  317 bits (779), Expect = 5e-87
 Identities = 141/254 (55%), Positives = 190/254 (74%)
 Frame = +1

Query: 115 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 294
           FNI  GYLE + RG + G+L  +DY NL QCE L+D+K+HL  T YG +L NEPSPL  +
Sbjct: 9   FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQNEPSPLHTT 68

Query: 295 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 474
           TI +K   KLV +++H+   + EP+STFL++I Y +MIDN++L++TGTLH+R + ELI K
Sbjct: 69  TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128

Query: 475 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 654
           CHPLG F+ +  + VA    ELY  VLVDTPLAP+F +C++ +DLD+MNIEI+RNTLYKA
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188

Query: 655 YLEAFYDFCKQIGGTTADVMCEILXFEADRRAIIITINSFGTELSKDDRAKLYPRCGKLN 834
           YLE FY+FC+++GG TA++M ++L FEADRRA+ ITINS GTEL+++DR KLY   G L 
Sbjct: 189 YLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLLY 248

Query: 835 PDGLAALARADDYE 876
           P G   LA  +D +
Sbjct: 249 PYGHEELAICEDID 262


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score =  317 bits (779), Expect = 5e-87
 Identities = 141/254 (55%), Positives = 190/254 (74%)
 Frame = +1

Query: 115 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 294
           FNI  GYLE + RG + G+L  +DY NL QCE L+D+K+HL  T YG++L NEPSPL  +
Sbjct: 9   FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQNEPSPLHTT 68

Query: 295 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 474
           TI +K   KLV +++H+   + EP+STFL++I Y +MIDN++L++TGTLH+R + ELI K
Sbjct: 69  TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128

Query: 475 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 654
           CHPLG F+ +  + VA    ELY  VLVDTPLAP+F +C++ +DLD+MNIEI+RNTLYKA
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188

Query: 655 YLEAFYDFCKQIGGTTADVMCEILXFEADRRAIIITINSFGTELSKDDRAKLYPRCGKLN 834
           YLE FY FC+++GG TA++M ++L FEADRRA+ ITINS GTEL+++DR KLY   G L 
Sbjct: 189 YLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLLY 248

Query: 835 PDGLAALARADDYE 876
           P G   LA  +D +
Sbjct: 249 PYGHEELAICEDID 262


>At1g77320.1 68414.m09005 BRCT domain-containing protein contains
           Pfam profile PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 783

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 538 LYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRN 639
           LY+ +   TPL  F   CI     +E N+E++RN
Sbjct: 463 LYSPLPCQTPLPGFESLCICSSQHNEKNVELLRN 496


>At5g24820.1 68418.m02932 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 407

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +1

Query: 199 VQCETLEDLKLHLQGTDY-----GTFLANEPSPLSVSTIDDKLREK 321
           ++ ++L  L LH QG DY     G +L + PS L  + +   ++++
Sbjct: 322 LEIDSLPKLTLHFQGLDYTISNKGLYLQDSPSSLCTALVRSSMKDE 367


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 772 FGTELSKDDRAKLYPRCGKLNPDGLAALARADD 870
           FG +LS++D AK       L+PD L  + R  D
Sbjct: 479 FGMKLSQEDAAKAQQAMASLSPDALEKMMRWAD 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,371
Number of Sequences: 28952
Number of extensions: 406371
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)