Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_D11
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 171 6e-43
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 151 5e-37
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 149 2e-36
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 106 2e-23
10_08_0120 + 14972010-14973197 33 0.37
08_01_0458 + 4046809-4047099,4047269-4047321,4047332-4047722,404... 30 2.0
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 30 2.6
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 29 3.5
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 29 4.6
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 29 4.6
10_08_0846 + 21001125-21001235,21001492-21001580,21001715-210018... 28 8.0
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 171 bits (416), Expect = 6e-43
Identities = 73/137 (53%), Positives = 105/137 (76%)
Frame = +2
Query: 422 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSY 601
WF+E MWPG S +V++VL KS YQN+ VF +++ GKVLVLDG+IQ T++DE +Y
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAY 93
Query: 602 QEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPF 781
QEMI+ LPLC K+P+ VL++GGGDGGV REV++H V+ I + EID V+++SK++ P
Sbjct: 94 QEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPH 153
Query: 782 MAVGSDSPKLTLHVGDG 832
+AVG + P+++LH+GDG
Sbjct: 154 LAVGFEDPRVSLHIGDG 170
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 151 bits (367), Expect = 5e-37
Identities = 67/129 (51%), Positives = 96/129 (74%)
Frame = +2
Query: 443 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 622
MWPG S +V+ +L+ KS YQ I VF++++ G VLVLDGI+Q T+KDE +YQEM++ L
Sbjct: 75 MWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHL 134
Query: 623 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGSDS 802
PLC +P++VL+VGGGDGGV RE+A+H V++I + EID VI++ K + P ++VG
Sbjct: 135 PLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKD 194
Query: 803 PKLTLHVGD 829
P++ LHVGD
Sbjct: 195 PRVQLHVGD 203
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 149 bits (362), Expect = 2e-36
Identities = 66/129 (51%), Positives = 94/129 (72%)
Frame = +2
Query: 443 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFL 622
MWPG S +V+++L+ KS YQ + VF++++ GKVLVLDGI+Q T KDE +YQEMI+ L
Sbjct: 86 MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHL 145
Query: 623 PLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGSDS 802
PLC +P+ VL++GGGDGGV RE+ +H V+ I + EID VI++ K + P ++VG
Sbjct: 146 PLCSIPSPKKVLVIGGGDGGVLREICRHGSVESIDICEIDQLVIDVCKDFFPDLSVGFKD 205
Query: 803 PKLTLHVGD 829
P++ LHVGD
Sbjct: 206 PRVRLHVGD 214
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 106 bits (255), Expect = 2e-23
Identities = 54/146 (36%), Positives = 79/146 (54%)
Frame = +2
Query: 392 KKKMDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 571
K++ + ++ W+ E D + + VLH SKYQ I + DT GK L++DG +
Sbjct: 31 KQQQREEESKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGKALIIDGKM 88
Query: 572 QCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRV 751
Q T+ DEF Y E + PL H NP+ V I+GGG+G AREV +H V +V+ +ID V
Sbjct: 89 QSTEVDEFIYHESLIHPPLLFHPNPKTVFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEV 148
Query: 752 IELSKRYLPFMAVGSDSPKLTLHVGD 829
++ + YL S KL L + D
Sbjct: 149 VDFCRTYLTVNWDAFASDKLCLIIND 174
>10_08_0120 + 14972010-14973197
Length = 395
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +1
Query: 439 RYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFG---EGSCLGRNHTMHSER*VFLSGN 609
RY FL+ + TAHR + P F FG EG+ + + H E VF +
Sbjct: 196 RYATDVEFLVGGETFTAHRLVLAARSPVFMVELFGPMKEGTTVNKIHIFDMEAQVFRALL 255
Query: 610 DIIFAFMLPQKSRK 651
I+ MLP+ ++
Sbjct: 256 KFIYTDMLPEMDQE 269
>08_01_0458 +
4046809-4047099,4047269-4047321,4047332-4047722,
4047998-4048291
Length = 342
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 641 NPENVLIVGGGDGGVAREVAK-HPQVKHIVL 730
N +++ VGGGDG +AR + K P +K +VL
Sbjct: 180 NVSSLVDVGGGDGSMARAIVKAFPHIKCLVL 210
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -1
Query: 278 IKTRFALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDL 153
+ T + T TL ++ I++Y+S +MI++I T+ ++NDL
Sbjct: 339 VVTILTMFTLITLYSTIIPISLYVSIEMIKFIQCTQFINNDL 380
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 638 KNPENVLIVGGGDGGV--AREVAKHPQVKHIVLVEIDDRVIE 757
++ E+VLI+GGG GV A E+A K + LV R++E
Sbjct: 127 ESSESVLIIGGGPTGVELAGEIAVDYPEKKVTLVHRGSRLLE 168
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 476 KEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 571
K+ LH S Y+N +V D +S G +V+DG++
Sbjct: 300 KKHLHGAFSTYKNYEVLDVSSNGGDVVVDGMV 331
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +2
Query: 596 SYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRY- 772
SY + LP + P V ++G G G A + K +V EID ++IELS+ Y
Sbjct: 123 SYWDEFVSLPAVVPRGP--VALLGLGAGTAAHLMLKFYPWLQLVGWEIDPKIIELSRDYF 180
Query: 773 -LPFMAVGSDS-PKLTLHVGD 829
L + ++S L++ +GD
Sbjct: 181 GLSDLEKATESGGSLSVRIGD 201
>10_08_0846 +
21001125-21001235,21001492-21001580,21001715-21001871,
21002076-21002186,21002282-21002413,21002686-21002784,
21003193-21003309,21004411-21004506,21004919-21005031,
21005589-21005709
Length = 381
Score = 28.3 bits (60), Expect = 8.0
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Frame = +2
Query: 485 LHTEKSKYQNIQVFDTTSLGKVLVLDG---IIQCTQKDEFSYQEMISFLPLCCH-KNPEN 652
L ++ +K + FD +LG +V I +C Q FS EMI F P+ + + EN
Sbjct: 62 LASDYTKASEVADFDWENLGFGIVQTDYMYITKCGQDGNFSEGEMIPFGPIALNPSSGEN 121
Query: 653 VLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGS 796
L + G R P V+ V+ + + +KR++P GS
Sbjct: 122 ALRM---RTGAERMCMPAPSVEQ--FVDAVKQTVLANKRWVPPTGKGS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,490,536
Number of Sequences: 37544
Number of extensions: 433869
Number of successful extensions: 997
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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